Factsheet for Solyc03g025170.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400026240	Potato	nucleus, plastid	94.61	91.28
Solyc06g036170.1.1	Tomato	nucleus	64.66	68.23
VIT_16s0050g00950.t01	Wine grape	cytosol, nucleus, plastid	54.52	58.4
CDY27821	Canola	cytosol	39.62	56.31
CDY00533	Canola	cytosol	39.3	55.61
Bra028312.1-P	Field mustard	cytosol	39.78	55.29
KRG91573	Soybean	plastid	47.07	50.0
KRH35251	Soybean	plastid	46.28	49.49
AT5G52510.1	Thale cress	nucleus	49.45	48.75
CDY27063	Canola	cytosol, plastid	44.22	48.44
Bra022596.1-P	Field mustard	plastid	44.06	48.01
CDX91655	Canola	cytosol	44.53	47.79
KRH38397	Soybean	plastid	40.1	46.85
KRH08880	Soybean	plastid	48.02	46.12
GSMUA_Achr5P12810_001	Banana	cytosol, plastid	37.88	42.53
GSMUA_Achr4P26400_001	Banana	cytosol, mitochondrion, plastid	38.67	41.78
GSMUA_AchrUn_...	Banana	plastid	37.88	40.85
GSMUA_Achr1P03650_001	Banana	mitochondrion	34.71	38.42
GSMUA_Achr9P18770_001	Banana	cytosol	34.55	38.31
Zm00001d002573_P001	Maize	cytosol	36.45	36.92
Zm00001d026050_P001	Maize	mitochondrion, nucleus, plastid	36.45	36.92
Os04t0580300-01	Rice	cytosol, nucleus, plastid	35.66	36.35
Os02t0681900-01	Rice	cytosol	35.5	36.25
Zm00001d051461_P001	Maize	cytosol	34.23	35.58
GSMUA_Achr4P24960_001	Banana	cytosol	27.26	35.46
EES05727	Sorghum	cytosol	35.34	35.45
TraesCS2D01G393200.1	Wheat	cytosol	35.02	35.25
TraesCS2A01G395400.1	Wheat	cytosol, mitochondrion, nucleus	35.02	35.02
EES12703	Sorghum	cytosol, nucleus, plastid	36.13	34.97
TraesCS2B01G413500.1	Wheat	cytosol	34.87	34.87
Solyc04g064550.1.1	Tomato	mitochondrion	30.43	34.1
Solyc06g035620.2.1	Tomato	cytosol	17.12	33.13
Solyc07g047950.1.1	Tomato	mitochondrion	25.67	29.72
Solyc11g012510.1.1	Tomato	mitochondrion	25.36	29.52
HORVU2Hr1G094040.2	Barley	cytosol, plastid	17.75	29.09
Solyc07g065270.1.1	Tomato	nucleus	24.56	28.81
Solyc04g014830.1.1	Tomato	mitochondrion	25.04	28.57
Solyc04g011630.1.1	Tomato	cytosol	7.61	28.24
Solyc12g005340.1.1	Tomato	cytosol	24.56	27.78
Solyc07g063940.1.1	Tomato	cytosol, nucleus, peroxisome	25.2	27.27
Solyc01g100200.2.1	Tomato	nucleus	18.07	17.12
Solyc05g054170.2.1	Tomato	mitochondrion, nucleus	8.56	16.22
Solyc06g076280.1.1	Tomato	cytosol	18.38	15.51
Solyc06g082530.1.1	Tomato	cytosol	16.01	15.47
Solyc09g010920.1.1	Tomato	cytosol	18.38	15.24
Solyc10g086530.1.1	Tomato	cytosol	17.27	14.32
Solyc05g053090.1.1	Tomato	cytosol	15.85	13.46

Protein Annotations

MapMan:15.5.12	EMBL:DQ399831	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0043565	InterPro:IPR005202	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF4
UniProt:Q00LP0	EnsemblPlantsGene:Solyc03g025170.1	EnsemblPlants:Solyc03g025170.1.1	InterPro:TF_GRAS	UniParc:UPI0000E583E1	SEG:seg

Description

GRAS10 [Source:UniProtKB/TrEMBL;Acc:Q00LP0]

Coordinates

chr3:-:2625853..2627748

Molecular Weight (calculated)

69131.1 Da

IEP (calculated)

6.598

GRAVY (calculated)

-0.359

Length

631 amino acids

Sequence
(BLAST)

001: MSSGFSGEIY GAGGRSTMNN NNSQRPYSSP LSGILPDPVT QMVHQGRPNL MGKRSLAEFQ QQQQLQFLQL QQQKQQQQQM MLLQQQQQQG IGFYLRNVKP
101: RSYQQSSPMS PLSPVDFSIA AAASISSSNS NVSTMMNTRQ ALPVLQQPAN MGGFLSPGIQ NYSTGVSSLN PVQNGATIGV QESDKKMMNC LQELEKQLLD
201: DNDEEEGDTV SVITNNEWSE TIQNLISPSQ NQNQIQKLAS LSPSSSTSSC ASSTESPAIS CPKQSIIEAA TAIYDGKNDV ALEILTRLSQ VANIRGSSDQ
301: RLTAYMVAAL RSRLNPVDYP PPVLELQSKE HTETTHNLYE VSPCFKLGFM AANLAILEAV ADHPFNKLHV IDFDIGQGGQ YLHLLHALAA KKSNNPAVLK
401: ITAFTEQAGG VDERLNSIHM ELNSVANRLG VCLYFNVMSC KVADLSRENL GLDPDDALAV NFAFKLYRLP DESVTTENLR DELLRRVKAL SPKVVTVVEQ
501: DMNGNTAPFL ARVNEACGHY GAIFDSLDAT VPRDSMDRVR IEEGLSRKMC NSVACEGRDR VERCEVFGKW RARMSMAGFG PKPVSQIVAN SLRSKLNSGT
601: RGNPGFTVNE QSGGICFGWM GRTLTVASAW R

Best Arabidopsis Sequence Match ( AT5G52510.1 )
(BLAST)

001: MESGFSGGGG GSDFYGGGGG RSIPGGPGTV INVGNNNPQT TYRNQIPGIF FDQIGNRVAG GNGFSGKRTL ADFQAAQQHQ QQQQQQPFYS QAALNAFLSR
101: SVKPRNYQNF QSPSPMIDLT SVNDMSLFGG SGSSQRYGLP VPRSQTQQQQ SDYGLFGGIR MGIGSGINNY PTLTGVPCIE PVQNRVHESE NMLNSLRELE
201: KQLLDDDDES GGDDDVSVIT NSNSDWIQNL VTPNPNPNPV LSFSPSSSSS SSSPSTASTT TSVCSRQTVM EIATAIAEGK TEIATEILAR VSQTPNLERN
301: SEEKLVDFMV AALRSRIASP VTELYGKEHL ISTQLLYELS PCFKLGFEAA NLAILDAADN NDGGMMIPHV IDFDIGEGGQ YVNLLRTLST RRNGKSQSQN
401: SPVVKITAVA NNVYGCLVDD GGEERLKAVG DLLSQLGDRL GISVSFNVVT SLRLGDLNRE SLGCDPDETL AVNLAFKLYR VPDESVCTEN PRDELLRRVK
501: GLKPRVVTLV EQEMNSNTAP FLGRVSESCA CYGALLESVE STVPSTNSDR AKVEEGIGRK LVNAVACEGI DRIERCEVFG KWRMRMSMAG FELMPLSEKI
601: AESMKSRGNR VHPGFTVKED NGGVCFGWMG RALTVASAWR

Arabidopsis Description

SCL8Scarecrow-like protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYR7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.