Factsheet for GSMUA_AchrUn_randomP04680_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 3
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P26400_001	Banana	cytosol, mitochondrion, plastid	76.75	76.88
GSMUA_Achr5P12810_001	Banana	cytosol, plastid	68.21	71.0
GSMUA_Achr1P03650_001	Banana	mitochondrion	62.39	64.04
GSMUA_Achr4P24960_001	Banana	cytosol	49.74	60.0
GSMUA_Achr9P18770_001	Banana	cytosol	58.29	59.93
Zm00001d002573_P001	Maize	cytosol	51.28	48.15
CDY27821	Canola	cytosol	36.24	47.75
Zm00001d026050_P001	Maize	mitochondrion, nucleus, plastid	50.09	47.03
Os04t0580300-01	Rice	cytosol, nucleus, plastid	49.74	47.01
Os02t0681900-01	Rice	cytosol	49.57	46.93
CDY00533	Canola	cytosol	35.73	46.86
Bra028312.1-P	Field mustard	cytosol	35.9	46.26
EES05727	Sorghum	cytosol	49.57	46.1
GSMUA_Achr8P03610_001	Banana	cytosol	11.28	45.83
Zm00001d051461_P001	Maize	cytosol	47.52	45.8
TraesCS2D01G393200.1	Wheat	cytosol	48.55	45.3
TraesCS2A01G395400.1	Wheat	cytosol, mitochondrion, nucleus	48.55	45.01
TraesCS2B01G413500.1	Wheat	cytosol	48.55	45.01
EES12703	Sorghum	cytosol, nucleus, plastid	49.4	44.33
GSMUA_Achr6P11780_001	Banana	cytosol	25.81	44.15
HORVU2Hr1G094040.2	Barley	cytosol, plastid	27.35	41.56
VIT_16s0050g00950.t01	Wine grape	cytosol, nucleus, plastid	41.03	40.75
CDY27063	Canola	cytosol, plastid	39.49	40.1
Bra022596.1-P	Field mustard	plastid	39.49	39.9
Solyc06g036170.1.1	Tomato	nucleus	40.17	39.3
CDX91655	Canola	cytosol	38.97	38.78
PGSC0003DMT400076932	Potato	nucleus	39.49	38.12
Solyc03g025170.1.1	Tomato	nucleus	40.85	37.88
KRG91573	Soybean	plastid	38.29	37.71
AT5G52510.1	Thale cress	nucleus	40.34	36.88
KRH35251	Soybean	plastid	36.92	36.61
PGSC0003DMT400026240	Potato	nucleus, plastid	40.0	35.78
KRH38397	Soybean	plastid	32.99	35.74
KRH08880	Soybean	plastid	38.97	34.7
GSMUA_Achr10P...	Banana	cytosol	31.97	33.88
GSMUA_Achr4P07010_001	Banana	cytosol	18.46	32.93
GSMUA_Achr3P02410_001	Banana	nucleus	31.45	31.35
GSMUA_Achr4P11050_001	Banana	nucleus	19.49	28.72
GSMUA_AchrUn_...	Banana	nucleus	20.17	27.57
GSMUA_Achr6P24310_001	Banana	cytosol	24.62	26.92
GSMUA_Achr9P12070_001	Banana	mitochondrion, plastid	20.68	23.27
GSMUA_Achr9P24710_001	Banana	endoplasmic reticulum, plastid	21.2	21.27
GSMUA_Achr5P08320_001	Banana	cytosol	14.02	18.26
GSMUA_Achr10P...	Banana	nucleus	12.82	16.97
GSMUA_Achr10P...	Banana	cytosol	17.27	16.86
GSMUA_Achr6P34090_001	Banana	nucleus	17.27	16.5
GSMUA_Achr8P02550_001	Banana	nucleus	10.94	16.33
GSMUA_Achr7P15080_001	Banana	cytosol	15.9	15.55
GSMUA_AchrUn_...	Banana	cytosol	14.87	13.2

Protein Annotations

MapMan:15.5.12	ncoils:Coil	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_AchrUn_randomG04680_001	EnsemblPlants:GSMUA_AchrUn_randomP04680_001	EnsemblPlants:GSMUA_AchrUn_randomT04680_001
InterPro:IPR005202	UniProt:M0U6D0	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636	PANTHER:PTHR31636:SF4
InterPro:TF_GRAS	UniParc:UPI000296964C	SEG:seg	:	:	:

Description

Putative Scarecrow-like protein 8 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG04680_001]

Coordinates

chrchrUn_random:+:18607492..18609249

Molecular Weight (calculated)

62381.1 Da

IEP (calculated)

7.131

GRAVY (calculated)

-0.140

Length

585 amino acids

Sequence
(BLAST)

001: MASGFPVREL GFGVQIPMPT RAEAGSGGLL KRSLTEMERQ RQQQQMQMQN AHFLRSVRQR TLLAPHASSH LSPPLLPVVL SSGSSSSVSA NLTASGFARP
101: QEHSSVPQAA GTGVERMRDR LQELERRLLL DEEEEEEEGE VSASSSAVTT AEWSDAMQQI ITPQAPVPTP LSSSPTSSSS STVSSSVSCS PPSTSTATVA
201: AASSSRQMLL DTAAAIADGN LETATANLAV LNRVANSRGD AEQRLTAMMV GALLSRLNPA QAGSTSLPIA ALCSGEHFAA AQMLYELSPC FKLGLVAANL
301: AILEATKDQS MIHILDFSLG QGGQYAALLH VLAERHRFQP AVCPPALRIT VVADPSFPFT NPNSSGNLRA VGDRIEKLAE RAGLEVRFSV VHRRAAELDA
401: STLGCQPGEA LAVNLAFALS RVPDESVSPA NPRDELLRRV RALRPRVVAL VEQDINTSTA AFAGRFAEAC AHYGALLESL DATVNRDSAE RARVEAGLAR
501: RAVNSVAREG MDRVERCEVF GKWRARMRMA GFESVPLGRD VIEPVKARLA SVAPDHGFTI REETGGHGLG FGWKGRAITV ASAWR

Best Arabidopsis Sequence Match ( AT5G52510.1 )
(BLAST)

001: MESGFSGGGG GSDFYGGGGG RSIPGGPGTV INVGNNNPQT TYRNQIPGIF FDQIGNRVAG GNGFSGKRTL ADFQAAQQHQ QQQQQQPFYS QAALNAFLSR
101: SVKPRNYQNF QSPSPMIDLT SVNDMSLFGG SGSSQRYGLP VPRSQTQQQQ SDYGLFGGIR MGIGSGINNY PTLTGVPCIE PVQNRVHESE NMLNSLRELE
201: KQLLDDDDES GGDDDVSVIT NSNSDWIQNL VTPNPNPNPV LSFSPSSSSS SSSPSTASTT TSVCSRQTVM EIATAIAEGK TEIATEILAR VSQTPNLERN
301: SEEKLVDFMV AALRSRIASP VTELYGKEHL ISTQLLYELS PCFKLGFEAA NLAILDAADN NDGGMMIPHV IDFDIGEGGQ YVNLLRTLST RRNGKSQSQN
401: SPVVKITAVA NNVYGCLVDD GGEERLKAVG DLLSQLGDRL GISVSFNVVT SLRLGDLNRE SLGCDPDETL AVNLAFKLYR VPDESVCTEN PRDELLRRVK
501: GLKPRVVTLV EQEMNSNTAP FLGRVSESCA CYGALLESVE STVPSTNSDR AKVEEGIGRK LVNAVACEGI DRIERCEVFG KWRMRMSMAG FELMPLSEKI
601: AESMKSRGNR VHPGFTVKED NGGVCFGWMG RALTVASAWR

Arabidopsis Description

SCL8Scarecrow-like protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYR7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.