Factsheet for GSMUA_Achr9P24710_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid

Predictor Summary:

plastid 3
extracellular 3
endoplasmic reticulum 4
vacuole 3
plasma membrane 3
golgi 3
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plastid
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P03610_001	Banana	cytosol	22.3	90.28
GSMUA_Achr9P12070_001	Banana	mitochondrion, plastid	56.6	63.46
GSMUA_Achr6P24310_001	Banana	cytosol	48.71	53.08
GSMUA_Achr4P07010_001	Banana	cytosol	28.64	50.91
TraesCS2B01G239400.1	Wheat	cytosol	47.51	48.6
EER97346	Sorghum	cytosol	47.34	48.42
TraesCS2D01G220200.1	Wheat	cytosol	47.34	48.42
TraesCS2A01G214400.1	Wheat	cytosol	47.17	48.25
HORVU2Hr1G043780.1	Barley	cytosol	47.17	48.25
Os07t0545800-01	Rice	cytosol, nucleus	46.48	47.46
Solyc06g035620.2.1	Tomato	cytosol	25.73	46.01
Zm00001d006551_P001	Maize	golgi, mitochondrion	47.17	44.57
VIT_19s0014g04940.t01	Wine grape	cytosol	44.43	44.43
KRH22210	Soybean	cytosol, plastid	43.05	43.5
KRH55599	Soybean	plastid	42.2	43.31
GSMUA_Achr4P11050_001	Banana	nucleus	28.99	42.57
Solyc12g005340.1.1	Tomato	cytosol	40.48	42.29
KRH25905	Soybean	cytosol, plastid	41.17	42.25
KRH27129	Soybean	plastid	40.48	42.07
PGSC0003DMT400056120	Potato	cytosol	40.14	41.86
GSMUA_AchrUn_...	Banana	nucleus	30.53	41.59
Solyc07g063940.1.1	Tomato	cytosol, nucleus, peroxisome	40.48	40.48
PGSC0003DMT400049492	Potato	cytosol	40.14	40.21
GSMUA_Achr6P11780_001	Banana	cytosol	22.47	38.3
GSMUA_Achr10P...	Banana	cytosol	27.62	29.17
GSMUA_Achr3P02410_001	Banana	nucleus	28.99	28.79
GSMUA_Achr5P12810_001	Banana	cytosol, plastid	20.75	21.53
GSMUA_AchrUn_...	Banana	plastid	21.27	21.2
GSMUA_Achr4P26400_001	Banana	cytosol, mitochondrion, plastid	20.58	20.55
GSMUA_Achr9P18770_001	Banana	cytosol	19.9	20.39
GSMUA_Achr1P03650_001	Banana	mitochondrion	19.73	20.18
GSMUA_Achr4P24960_001	Banana	cytosol	14.24	17.11
GSMUA_Achr8P02550_001	Banana	nucleus	10.46	15.56
GSMUA_Achr5P08320_001	Banana	cytosol	11.15	14.48
GSMUA_Achr10P...	Banana	nucleus	10.63	14.03
GSMUA_Achr6P34090_001	Banana	nucleus	14.41	13.73
GSMUA_AchrUn_...	Banana	cytosol	15.27	13.51
GSMUA_Achr10P...	Banana	cytosol	13.04	12.69
GSMUA_Achr7P15080_001	Banana	cytosol	10.63	10.37

Protein Annotations

EnsemblPlants:GSMUA_Achr9P24710_001	EnsemblPlants:GSMUA_Achr9T24710_001	EnsemblPlantsGene:GSMUA_Achr9G24710_001	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:TF_GRAS
PANTHER:PTHR31636	PANTHER:PTHR31636:SF18	PFAM:PF03514	PFscan:PS50985	UniParc:UPI000296F225	UniProt:M0U378
MapMan:15.5.12	:	:	:	:	:

Description

Chitin-inducible gibberellin-responsive protein, putative [Source:GMGC_GENE;Acc:GSMUA_Achr9G24710_001]

Coordinates

chr9:-:29409785..29415465

Molecular Weight (calculated)

65346.6 Da

IEP (calculated)

9.410

GRAVY (calculated)

-0.539

Length

583 amino acids

Sequence
(BLAST)

001: MITKPSFLAC VTVYTRSIAY VVYPSNATTA SVAVGPTTSV HSSPGRMRVG VKGIIITPVE YANLTCRLPP KEGAHDHVSP CLTRTREDGR LGWSQSGQKR
101: RNIRESDPPP SNVHPTVARD TSGHLLTPPA WESEDIYRES YSLQNRSYTE WTFDSIKSAL GNSLNSPTSS RFEFFPLLSN SQEQNSFTKP SRVSKSGLDS
201: IQAVPSSSSR DPRTIRLTYA VSSQSMKHTL QELGIVLMAP DTVKPTTSTD PELNENKQPQ LTKQRSRTWT HKTQLESPTI PQPRYTSGGH MNISHEARPG
301: KRVREVRKQS GTDVKQPDVK QLLIECAKAL SENKIEEFEL LVGKAHRAVS ISGEPLQRLG AYMLEGLVAR HESSGTNIYH GLRSRKPESK ELLSYMGILY
401: DICPYFKTGE ALAVNFTLQL HHTPDESVDV NNPRDGLLRM VKGLSPKVTT LVEQESNTNT TPFLTRFIET LDYYSAMFES IDATLKRDSK ERIDVEQHCL
501: AKDIVNIIAC EEKDRVERHE LLGKWRSRLS MAGFKPYPLS SYVNSVIKTL LSYYSNKYTA VEKDGALLLG WKTRNLISAS AWH

Best Arabidopsis Sequence Match ( AT2G04890.1 )
(BLAST)

001: MDNVRGSIML QPLPEIAESI DDAICHELSM WPDDAKDLLL IVEAISRGDL KLVLVACAKA VSENNLLMAR WCMGELRGMV SISGEPIQRL GAYMLEGLVA
101: RLAASGSSIY KSLQSREPES YEFLSYVYVL HEVCPYFKFG YMSANGAIAE AMKDEERIHI IDFQIGQGSQ WIALIQAFAA RPGGAPNIRI TGVGDGSVLV
201: TVKKRLEKLA KKFDVPFRFN AVSRPSCEVE VENLDVRDGE ALGVNFAYML HHLPDESVSM ENHRDRLLRM VKSLSPKVVT LVEQECNTNT SPFLPRFLET
301: LSYYTAMFES IDVMLPRNHK ERINIEQHCM ARDVVNIIAC EGAERIERHE LLGKWKSRFS MAGFEPYPLS SIISATIRAL LRDYSNGYAI EERDGALYLG
401: WMDRILVSSC AWK

Arabidopsis Description

SCL21SCL21 [Source:UniProtKB/TrEMBL;Acc:A0A178VWV4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.