Factsheet for Os07t0545800-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 12591613

gfp PMID: 12591613 doi

RB Day, N Shibuya, E Minami

Department of Biochemistry, National Institute of Agrobiological Sciences, 2-1-2 Kannondai, 305-8602, Tsukuba, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G239400.1	Wheat	cytosol	89.49	89.65
TraesCS2D01G220200.1	Wheat	cytosol	89.32	89.47
HORVU2Hr1G043780.1	Barley	cytosol	89.32	89.47
TraesCS2A01G214400.1	Wheat	cytosol	89.32	89.47
EER97346	Sorghum	cytosol	88.97	89.12
GSMUA_Achr8P03610_001	Banana	cytosol	21.37	84.72
Zm00001d006551_P001	Maize	golgi, mitochondrion	85.81	79.42
GSMUA_Achr6P24310_001	Banana	cytosol	63.92	68.22
Solyc06g035620.2.1	Tomato	cytosol	36.95	64.72
VIT_19s0014g04940.t01	Wine grape	cytosol	60.6	59.35
KRH22210	Soybean	cytosol, plastid	58.14	57.54
KRH27129	Soybean	plastid	56.22	57.22
KRH55599	Soybean	plastid	56.92	57.22
KRH25905	Soybean	cytosol, plastid	56.22	56.51
GSMUA_Achr9P12070_001	Banana	mitochondrion, plastid	50.79	55.77
Solyc12g005340.1.1	Tomato	cytosol	53.59	54.84
PGSC0003DMT400056120	Potato	cytosol	53.06	54.2
Solyc07g063940.1.1	Tomato	cytosol, nucleus, peroxisome	55.34	54.2
PGSC0003DMT400049492	Potato	cytosol	54.82	53.78
Os07t0583600-01	Rice	plasma membrane	44.31	46.51
GSMUA_Achr9P24710_001	Banana	endoplasmic reticulum, plastid	47.46	46.48
Os03t0193000-01	Rice	plastid	42.73	45.61
Os01t0881500-01	Rice	cytosol	37.13	38.34
Os04t0580300-01	Rice	cytosol, nucleus, plastid	25.22	23.26
Os02t0681900-01	Rice	cytosol	24.52	22.65
Os11t0706200-00	Rice	nucleus	22.07	21.25
Os11t0705900-01	Rice	cytosol	22.07	19.63
Os11t0705200-01	Rice	cytosol	23.64	19.51
Os04t0590400-01	Rice	cytosol, nucleus, peroxisome	21.54	19.34
Os12t0573200-01	Rice	cytosol, plasma membrane	23.47	18.16
Os03t0690600-03	Rice	cytosol	21.89	17.1
Os01t0842200-01	Rice	cytosol	23.29	16.22
Os11t0139600-01	Rice	nucleus	14.01	13.72

Protein Annotations

MapMan:15.5.12	EntrezGene:4343521	EMBL:AY062209	ProteinID:BAD30510.1	ProteinID:BAF21831.1	ProteinID:BAT02004.1
ProteinID:EEE67359.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
InterPro:IPR005202	EnsemblPlantsGene:Os07g0545800	EnsemblPlants:Os07t0545800-01	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636
PANTHER:PTHR31636:SF18	UniProt:Q69VG1	InterPro:TF_GRAS	UniParc:UPI00003FE7BC	RefSeq:XP_015646796.1	:

Description

CHITIN INDUSIBLE GIBBERELLIN RESPONSIVE GENE 1Similar to Chitin-inducible gibberellin-responsive protein. (Os07t0545800-01)

Coordinates

chr7:+:21614976..21619678

Molecular Weight (calculated)

64605.8 Da

IEP (calculated)

6.176

GRAVY (calculated)

-0.478

Length

571 amino acids

Sequence
(BLAST)

001: MDLHQLLKYR LTGANVVYEI PTENNLQNSP WQANPLKYEF SDSPYTPLSS QFECDNLSAL TNTPDNQSST ETISAQPISP LEADSSYRQA GILLQENIQV
101: GADPLYATSR HNMQHALREI ETVLMAPDTD DATTSTKHEF EEIKPAQLVR QRSRTWSHES RQPLPGVGRS QFASGGYPTA SYEFRPEKRQ RELREDPQII
201: VKQLLTRCAE ALSEDRTEEF HKLVQEARGV VSINGEPIQR LGAYLLEGLV ARHGNSGTNI YRALKCREPE SKELLSYMRI LYNICPYFKF GYMAANGAIA
301: EALRTENNIH IIDFQIAQGT QWITLIQALA ARPGGPPRVR ITGIDDPVSE YARGEGLDIV GKMLKSMSEE FKIPLEFTPL SVYATQVTKE MLEIRPGEAL
401: SVNFTLQLHH TPDESVDVNN PRDGLLRMVK GLSPKVTTLV EQESHTNTTP FLMRFGETME YYSAMFESID ANLPRDNKER ISVEQHCLAK DIVNIIACEG
501: KDRVERHELL GKWKSRLTMA GFRPYPLSSY VNSVIRKLLA CYSDKYTLDE KDGAMLLGWR SRKLISASAW H

Best Arabidopsis Sequence Match ( AT5G48150.3 )
(BLAST)

001: MYKQPRQELE AYYFEPNSVE KLRYLPVNNS RKRFCTLEPF PDSPPYNALS TATYDDTCGS CVTDELNDFK HKIREIETVM MGPDSLDLLV DCTDSFDSTA
101: SQEINGWRST LEAISRRDLR ADLVSCAKAM SENDLMMAHS MMEKLRQMVS VSGEPIQRLG AYLLEGLVAQ LASSGSSIYK ALNRCPEPAS TELLSYMHIL
201: YEVCPYFKFG YMSANGAIAE AMKEENRVHI IDFQIGQGSQ WVTLIQAFAA RPGGPPRIRI TGIDDMTSAY ARGGGLSIVG NRLAKLAKQF NVPFEFNSVS
301: VSVSEVKPKN LGVRPGEALA VNFAFVLHHM PDESVSTENH RDRLLRMVKS LSPKVVTLVE QESNTNTAAF FPRFMETMNY YAAMFESIDV TLPRDHKQRI
401: NVEQHCLARD VVNIIACEGA DRVERHELLG KWRSRFGMAG FTPYPLSPLV NSTIKSLLRN YSDKYRLEER DGALYLGWMH RDLVASCAWK

Arabidopsis Description

PAT1Scarecrow-like transcription factor PAT1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDL7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.