Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_13s0019g01780.t01 | Wine grape | nucleus | 60.5 | 72.5 |
| Solyc04g011630.1.1 | Tomato | cytosol | 16.41 | 69.41 |
| VIT_13s0019g01810.t01 | Wine grape | cytosol | 65.92 | 63.37 |
| VIT_13s0019g01700.t01 | Wine grape | cytosol | 66.76 | 63.16 |
| VIT_13s0019g01710.t01 | Wine grape | cytosol | 60.78 | 60.11 |
| VIT_08s0007g00510.t01 | Wine grape | cytosol, plastid | 52.85 | 53.6 |
| PGSC0003DMT400016258 | Potato | cytosol | 53.41 | 52.75 |
| VIT_06s0004g04990.t01 | Wine grape | cytosol | 31.99 | 52.04 |
| GSMUA_Achr10P... | Banana | nucleus | 31.71 | 51.58 |
| GSMUA_Achr10P... | Banana | cytosol | 41.59 | 49.92 |
| Solyc05g053090.1.1 | Tomato | cytosol | 50.76 | 49.13 |
| PGSC0003DMT400069949 | Potato | cytosol | 50.9 | 49.0 |
| GSMUA_Achr7P15080_001 | Banana | cytosol | 39.78 | 47.83 |
| GSMUA_Achr8P02550_001 | Banana | nucleus | 25.31 | 46.43 |
| VIT_06s0004g04950.t01 | Wine grape | cytosol | 47.84 | 45.62 |
| VIT_06s0004g04980.t01 | Wine grape | nucleus | 44.23 | 45.17 |
| GSMUA_Achr6P34090_001 | Banana | nucleus | 38.39 | 45.1 |
| Zm00001d028603_P001 | Maize | cytosol | 45.76 | 44.82 |
| VIT_06s0004g04970.t01 | Wine grape | cytosol | 40.75 | 44.53 |
| Zm00001d011070_P001 | Maize | cytosol | 38.8 | 44.5 |
| OQU92829 | Sorghum | cytosol | 45.34 | 44.41 |
| Zm00001d034664_P001 | Maize | plastid | 34.21 | 44.01 |
| HORVU3Hr1G012520.1 | Barley | cytosol | 27.82 | 43.86 |
| KXG21080 | Sorghum | cytosol | 37.55 | 43.13 |
| Os03t0690600-03 | Rice | cytosol | 43.53 | 42.82 |
| TraesCS1B01G037500.1 | Wheat | cytosol | 24.48 | 42.62 |
| Os04t0590400-01 | Rice | cytosol, nucleus, peroxisome | 37.69 | 42.61 |
| KXG38103 | Sorghum | cytosol | 37.0 | 42.49 |
| HORVU5Hr1G113620.1 | Barley | cytosol, nucleus, peroxisome | 37.0 | 41.3 |
| KXG21079 | Sorghum | cytosol | 35.6 | 41.09 |
| KXG37250 | Sorghum | cytosol | 36.86 | 40.71 |
| Zm00001d035671_P001 | Maize | cytosol | 35.19 | 40.42 |
| VIT_06s0004g04960.t01 | Wine grape | nucleus | 44.78 | 40.4 |
| TraesCS5D01G494900.1 | Wheat | cytosol | 36.86 | 40.33 |
| TraesCS5B01G494500.1 | Wheat | cytosol | 36.72 | 40.18 |
| TraesCS5A01G139000.1 | Wheat | cytosol, plastid | 43.25 | 40.08 |
| TraesCS5B01G138100.1 | Wheat | cytosol, plastid | 43.12 | 39.95 |
| TraesCS5D01G152700.1 | Wheat | cytosol, plastid | 42.98 | 39.92 |
| HORVU5Hr1G045020.29 | Barley | cytosol | 43.67 | 39.9 |
| TraesCS5A01G481300.1 | Wheat | cytosol | 36.3 | 39.85 |
| GSMUA_AchrUn_... | Banana | cytosol | 35.6 | 38.85 |
| Zm00001d047813_P002 | Maize | nucleus | 44.78 | 38.84 |
| HORVU3Hr1G012550.6 | Barley | cytosol | 31.99 | 38.59 |
| Zm00001d035670_P001 | Maize | cytosol | 36.16 | 35.81 |
| TraesCS1B01G037300.1 | Wheat | cytosol | 34.49 | 35.23 |
| TraesCS1A01G030300.1 | Wheat | cytosol | 34.21 | 34.84 |
| OQU91407 | Sorghum | nucleus | 33.24 | 34.84 |
| EES18880 | Sorghum | cytosol | 35.88 | 34.82 |
| EES18882 | Sorghum | cytosol | 35.47 | 34.79 |
| TraesCS1D01G030800.1 | Wheat | cytosol | 33.8 | 34.66 |
| TraesCS1D01G030900.1 | Wheat | cytosol | 34.21 | 34.5 |
| TraesCS3D01G067900.1 | Wheat | nucleus | 33.1 | 34.49 |
| HORVU1Hr1G004440.1 | Barley | cytosol | 34.35 | 34.35 |
| Zm00001d033166_P001 | Maize | nucleus | 34.63 | 34.02 |
| EER91260 | Sorghum | nucleus | 33.94 | 33.84 |
| TraesCS3B01G081100.1 | Wheat | nucleus | 33.52 | 33.71 |
| TraesCS1D01G031000.1 | Wheat | cytosol | 33.8 | 33.52 |
| TraesCS1B01G037400.1 | Wheat | cytosol | 33.66 | 33.47 |
| TraesCS3A01G068000.1 | Wheat | nucleus | 33.24 | 33.38 |
| OQU91406 | Sorghum | nucleus | 34.63 | 33.29 |
| TraesCS1A01G030200.1 | Wheat | cytosol | 33.38 | 33.29 |
| TraesCS1D01G031200.1 | Wheat | cytosol | 33.52 | 33.06 |
| TraesCS3A01G067900.1 | Wheat | cytosol | 33.1 | 32.96 |
| KXG38064 | Sorghum | nucleus | 32.96 | 32.92 |
| TraesCS3B01G080900.1 | Wheat | nucleus | 32.68 | 32.59 |
| TraesCS3D01G067700.1 | Wheat | cytosol | 32.55 | 32.41 |
| TraesCS3B01G081000.1 | Wheat | cytosol | 32.68 | 32.28 |
| TraesCS3D01G067800.1 | Wheat | nucleus | 30.18 | 32.1 |
| TraesCS1B01G037200.1 | Wheat | nucleus | 31.29 | 29.72 |
| VIT_19s0090g01740.t01 | Wine grape | cytosol | 21.84 | 28.81 |
| VIT_00s0463g00020.t01 | Wine grape | nucleus | 21.56 | 28.44 |
| VIT_12s0057g00560.t01 | Wine grape | cytosol | 20.72 | 27.34 |
| VIT_19s0014g04940.t01 | Wine grape | cytosol | 19.05 | 23.5 |
| VIT_04s0044g01370.t01 | Wine grape | nucleus | 18.5 | 23.42 |
| VIT_18s0001g15270.t01 | Wine grape | cytosol, plastid | 18.36 | 23.36 |
| VIT_16s0050g00950.t01 | Wine grape | cytosol, nucleus, plastid | 16.13 | 19.69 |
Protein Annotations
| EntrezGene:100263396 | wikigene:100263396 | MapMan:15.5.12 | EMBL:AM471778 | ProteinID:CAN68326 | ProteinID:CAN68326.1 |
| ProteinID:CCB56334 | ProteinID:CCB56334.1 | UniProt:F6HNW4 | EMBL:FN595998 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:IPR005202 | EntrezGene:LOC100263396 | wikigene:LOC100263396 |
| PFAM:PF03514 | PFscan:PS50985 | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF44 | InterPro:TF_GRAS | UniParc:UPI00015C9963 |
| ArrayExpress:VIT_13s0019g01790 | EnsemblPlantsGene:VIT_13s0019g01790 | EnsemblPlants:VIT_13s0019g01790.t01 | RefSeq:XP_002278333 | RefSeq:XP_002278333.1 | SEG:seg |
Description
No Description!
Coordinates
chr13:+:3178344..3180505
Molecular Weight (calculated)
80957.0 Da
IEP (calculated)
5.908
GRAVY (calculated)
-0.454
Length
719 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRPSRGIEF SEDSVPLLSG ENLPGGLKFQ EPFLYQNNID TVPISLHPSG SNLASWPCAG VEEDPLADSD FSDIALKYLS QILMEEDLEE KTGMFKESLA
101: LEATEKLFHD IIGEIYPPPG EENCGNPSEN DSIDFSTCNS NDTRDGNLVE PGRNYDKSPH IASQSTSHSL SSSSSPNIVL DGFVDVPMST LKVPNIFNDR
201: ESVLQFRRGF EEASKFLPNR SDLSVDSANH NTELLVPNNV MNKVEKKHGG EHFTDGSRGK KKTHRDLECE EVKSNKQSAV YNEMTLTSEM FDRVLLCDAD
301: AYEAALRESF QNETSKTLQQ DGQSKGSNAG KPRGWKKGGK KDLVDLRSLL ALCAQAVADD DQVSAGKQLQ QIRQHASPMG DGMQRLAHYF ANALEARLDG
401: SGSQICKAVI TKPSGAHFLK VYHLLLAVCP FLKVLNFFTN KTITKAAEKA ERLHIIDFGV LYGFSWPSLL QRLSTRPGGP PKLRITGIDF PEPGFRPAQR
501: VEETGRWIAN YAKSFNVPFQ FNAIAQKFET VQVGDLKIGS EEVVIVRCRY RFKNLLDETV VAESPRNIVL NLIRKMNPDI FIHAVVNAAC DAPFFMTRFR
601: EALFHYSALF DMLENNVPRN ILERVVIERE VFGREIMNMI ACEGPERIER PETYKQWQIR NERAGFRQLP LDQEIVNIAK ERVKSCYHKD FMIDEDGQWL
701: RQGWKGRIIF AITSWKPAS
101: LEATEKLFHD IIGEIYPPPG EENCGNPSEN DSIDFSTCNS NDTRDGNLVE PGRNYDKSPH IASQSTSHSL SSSSSPNIVL DGFVDVPMST LKVPNIFNDR
201: ESVLQFRRGF EEASKFLPNR SDLSVDSANH NTELLVPNNV MNKVEKKHGG EHFTDGSRGK KKTHRDLECE EVKSNKQSAV YNEMTLTSEM FDRVLLCDAD
301: AYEAALRESF QNETSKTLQQ DGQSKGSNAG KPRGWKKGGK KDLVDLRSLL ALCAQAVADD DQVSAGKQLQ QIRQHASPMG DGMQRLAHYF ANALEARLDG
401: SGSQICKAVI TKPSGAHFLK VYHLLLAVCP FLKVLNFFTN KTITKAAEKA ERLHIIDFGV LYGFSWPSLL QRLSTRPGGP PKLRITGIDF PEPGFRPAQR
501: VEETGRWIAN YAKSFNVPFQ FNAIAQKFET VQVGDLKIGS EEVVIVRCRY RFKNLLDETV VAESPRNIVL NLIRKMNPDI FIHAVVNAAC DAPFFMTRFR
601: EALFHYSALF DMLENNVPRN ILERVVIERE VFGREIMNMI ACEGPERIER PETYKQWQIR NERAGFRQLP LDQEIVNIAK ERVKSCYHKD FMIDEDGQWL
701: RQGWKGRIIF AITSWKPAS
001: MITEPSLTGI SGMVNRNRLS GLPDQPSSHS FTPVTLYDGF NYNLSSDHIN TVVAAPENSV FIREEEEEED PADDFDFSDA VLGYISQMLN EEDMDDKVCM
101: LQESLDLEAA ERSLYEAIGK KYPPSPERNL AFAERNSENL DRVVPGNYTG GDCIGFGNGG IKPLSSGFTL DFRNPQSCSS ILSVPQSNGL ITIYGDGIDE
201: SSKNNRENHQ SVWLFRREIE EANRFNPEEN ELIVNFREEN CVSKARKNSS RDEICVEEER SSKLPAVFGE DILRSDVVDK ILVHVPGGES MKEFNALRDV
301: LKKGVEKKKA SDAQGGKRRA RGRGRGRGRG GGGGQNGKKE VVDLRSLLIH CAQAVAADDR RCAGQLLKQI RLHSTPFGDG NQRLAHCFAN GLEARLAGTG
401: SQIYKGIVSK PRSAAAVLKA HQLFLACCPF RKLSYFITNK TIRDLVGNSQ RVHVIDFGIL YGFQWPTLIH RFSMYGSPKV RITGIEFPQP GFRPAQRVEE
501: TGQRLAAYAK LFGVPFEYKA IAKKWDAIQL EDLDIDRDEI TVVNCLYRAE NLHDESVKVE SCRDTVLNLI GKINPDLFVF GIVNGAYNAP FFVTRFREAL
601: FHFSSIFDML ETIVPREDEE RMFLEMEVFG REALNVIACE GWERVERPET YKQWHVRAMR SGLVQVPFDP SIMKTSLHKV HTFYHKDFVI DQDNRWLLQG
701: WKGRTVMALS VWKPESKA
101: LQESLDLEAA ERSLYEAIGK KYPPSPERNL AFAERNSENL DRVVPGNYTG GDCIGFGNGG IKPLSSGFTL DFRNPQSCSS ILSVPQSNGL ITIYGDGIDE
201: SSKNNRENHQ SVWLFRREIE EANRFNPEEN ELIVNFREEN CVSKARKNSS RDEICVEEER SSKLPAVFGE DILRSDVVDK ILVHVPGGES MKEFNALRDV
301: LKKGVEKKKA SDAQGGKRRA RGRGRGRGRG GGGGQNGKKE VVDLRSLLIH CAQAVAADDR RCAGQLLKQI RLHSTPFGDG NQRLAHCFAN GLEARLAGTG
401: SQIYKGIVSK PRSAAAVLKA HQLFLACCPF RKLSYFITNK TIRDLVGNSQ RVHVIDFGIL YGFQWPTLIH RFSMYGSPKV RITGIEFPQP GFRPAQRVEE
501: TGQRLAAYAK LFGVPFEYKA IAKKWDAIQL EDLDIDRDEI TVVNCLYRAE NLHDESVKVE SCRDTVLNLI GKINPDLFVF GIVNGAYNAP FFVTRFREAL
601: FHFSSIFDML ETIVPREDEE RMFLEMEVFG REALNVIACE GWERVERPET YKQWHVRAMR SGLVQVPFDP SIMKTSLHKV HTFYHKDFVI DQDNRWLLQG
701: WKGRTVMALS VWKPESKA
Arabidopsis Description
SCL9Scarecrow-like protein 9 [Source:UniProtKB/Swiss-Prot;Acc:O80933]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.