Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc05g053090.1.1 | Tomato | cytosol | 93.31 | 93.81 |
| PGSC0003DMT400016258 | Potato | cytosol | 66.27 | 67.99 |
| VIT_13s0019g01810.t01 | Wine grape | cytosol | 56.36 | 56.28 |
| VIT_13s0019g01710.t01 | Wine grape | cytosol | 53.68 | 55.16 |
| GSMUA_Achr10P... | Banana | nucleus | 32.26 | 54.52 |
| VIT_13s0019g01700.t01 | Wine grape | cytosol | 53.95 | 53.03 |
| VIT_13s0019g01780.t01 | Wine grape | nucleus | 42.44 | 52.83 |
| PGSC0003DMT400049420 | Potato | cytosol | 46.72 | 52.56 |
| GSMUA_Achr10P... | Banana | cytosol | 41.77 | 52.09 |
| VIT_13s0019g01790.t01 | Wine grape | cytosol | 49.0 | 50.9 |
| GSMUA_Achr7P15080_001 | Banana | cytosol | 39.63 | 49.5 |
| GSMUA_Achr8P02550_001 | Banana | nucleus | 25.84 | 49.23 |
| PGSC0003DMT400022997 | Potato | cytosol, plastid | 49.8 | 48.88 |
| HORVU3Hr1G012520.1 | Barley | cytosol | 29.72 | 48.68 |
| TraesCS1B01G037500.1 | Wheat | cytosol | 26.51 | 47.94 |
| GSMUA_Achr6P34090_001 | Banana | nucleus | 39.22 | 47.88 |
| PGSC0003DMT400005480 | Potato | cytosol | 30.66 | 47.02 |
| Zm00001d034664_P001 | Maize | plastid | 34.94 | 46.69 |
| OQU92829 | Sorghum | cytosol | 45.38 | 46.19 |
| Zm00001d028603_P001 | Maize | cytosol | 45.25 | 46.05 |
| Os03t0690600-03 | Rice | cytosol | 44.04 | 45.01 |
| KXG38103 | Sorghum | cytosol | 37.62 | 44.89 |
| KXG21079 | Sorghum | cytosol | 36.95 | 44.3 |
| Zm00001d011070_P001 | Maize | cytosol | 37.08 | 44.18 |
| Zm00001d035671_P001 | Maize | cytosol | 36.95 | 44.09 |
| KXG21080 | Sorghum | cytosol | 36.95 | 44.09 |
| Os04t0590400-01 | Rice | cytosol, nucleus, peroxisome | 36.55 | 42.92 |
| KXG37250 | Sorghum | cytosol | 37.22 | 42.7 |
| PGSC0003DMT400077972 | Potato | cytosol | 42.84 | 42.55 |
| TraesCS5A01G139000.1 | Wheat | cytosol, plastid | 43.51 | 41.88 |
| TraesCS5D01G152700.1 | Wheat | cytosol, plastid | 43.37 | 41.86 |
| PGSC0003DMT400063769 | Potato | cytosol, nucleus, peroxisome | 36.14 | 41.8 |
| TraesCS5B01G138100.1 | Wheat | cytosol, plastid | 43.11 | 41.49 |
| HORVU5Hr1G113620.1 | Barley | cytosol, nucleus, peroxisome | 35.74 | 41.46 |
| HORVU5Hr1G045020.29 | Barley | cytosol | 43.64 | 41.42 |
| TraesCS5A01G481300.1 | Wheat | cytosol | 36.01 | 41.07 |
| TraesCS5D01G494900.1 | Wheat | cytosol | 36.01 | 40.94 |
| TraesCS5B01G494500.1 | Wheat | cytosol | 36.01 | 40.94 |
| GSMUA_AchrUn_... | Banana | cytosol | 35.88 | 40.67 |
| Zm00001d047813_P002 | Maize | nucleus | 44.71 | 40.29 |
| PGSC0003DMT400078286 | Potato | nucleus | 35.61 | 39.88 |
| HORVU3Hr1G012550.6 | Barley | cytosol | 31.73 | 39.77 |
| TraesCS1B01G037300.1 | Wheat | cytosol | 36.41 | 38.64 |
| TraesCS1D01G030900.1 | Wheat | cytosol | 36.55 | 38.29 |
| HORVU1Hr1G004440.1 | Barley | cytosol | 36.55 | 37.97 |
| TraesCS1A01G030300.1 | Wheat | cytosol | 35.07 | 37.11 |
| TraesCS3D01G067900.1 | Wheat | nucleus | 34.14 | 36.96 |
| TraesCS1D01G031000.1 | Wheat | cytosol | 35.61 | 36.69 |
| TraesCS1D01G030800.1 | Wheat | cytosol | 34.4 | 36.66 |
| TraesCS1D01G031200.1 | Wheat | cytosol | 35.74 | 36.63 |
| TraesCS1B01G037400.1 | Wheat | cytosol | 35.07 | 36.24 |
| TraesCS3B01G080900.1 | Wheat | nucleus | 34.94 | 36.2 |
| TraesCS1A01G030200.1 | Wheat | cytosol | 34.81 | 36.06 |
| TraesCS3D01G067700.1 | Wheat | cytosol | 34.81 | 36.01 |
| TraesCS3B01G081000.1 | Wheat | cytosol | 34.81 | 35.71 |
| TraesCS3A01G067900.1 | Wheat | cytosol | 34.27 | 35.46 |
| Zm00001d035670_P001 | Maize | cytosol | 34.4 | 35.4 |
| TraesCS3B01G081100.1 | Wheat | nucleus | 33.87 | 35.38 |
| TraesCS3A01G068000.1 | Wheat | nucleus | 33.73 | 35.2 |
| EES18882 | Sorghum | cytosol | 34.4 | 35.06 |
| OQU91407 | Sorghum | nucleus | 31.86 | 34.69 |
| TraesCS3D01G067800.1 | Wheat | nucleus | 31.33 | 34.62 |
| TraesCS1B01G037200.1 | Wheat | nucleus | 34.94 | 34.48 |
| EES18880 | Sorghum | cytosol | 34.14 | 34.41 |
| Zm00001d033166_P001 | Maize | nucleus | 33.2 | 33.88 |
| KXG38064 | Sorghum | nucleus | 31.99 | 33.19 |
| EER91260 | Sorghum | nucleus | 31.99 | 33.15 |
| OQU91406 | Sorghum | nucleus | 32.8 | 32.75 |
| PGSC0003DMT400060553 | Potato | cytosol | 19.81 | 28.24 |
| PGSC0003DMT400015696 | Potato | cytosol | 19.95 | 27.85 |
| PGSC0003DMT400034763 | Potato | cytosol | 19.54 | 27.34 |
| PGSC0003DMT400057111 | Potato | nucleus | 19.54 | 27.19 |
| PGSC0003DMT400021748 | Potato | nucleus | 19.28 | 25.76 |
| PGSC0003DMT400049492 | Potato | cytosol | 19.41 | 24.91 |
| PGSC0003DMT400056120 | Potato | cytosol | 18.21 | 24.33 |
| PGSC0003DMT400063944 | Potato | cytosol, mitochondrion | 17.27 | 23.08 |
| PGSC0003DMT400076932 | Potato | nucleus | 13.52 | 16.67 |
| PGSC0003DMT400026240 | Potato | nucleus, plastid | 13.25 | 15.14 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400069949 | EnsemblPlantsGene:PGSC0003DMG400027198 | EntrezGene:102598749 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR005202 | InterPro:TF_GRAS |
| PANTHER:PTHR31636 | PANTHER:PTHR31636:SF44 | PFAM:PF03514 | PFscan:PS50985 | PGSC:PGSC0003DMG400027198 | RefSeq:XP_006355702.1 |
| RefSeq:XP_006355703.1 | SEG:seg | UniParc:UPI000296987A | UniProt:M1CLG2 | MapMan:15.5.12 | : |
Description
GRAS family transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400027198]
Coordinates
chr5:-:48329198..48332263
Molecular Weight (calculated)
84270.0 Da
IEP (calculated)
6.113
GRAVY (calculated)
-0.450
Length
747 amino acids
Sequence
(BLAST)
(BLAST)
001: MGQYHEAGSA IKLEDEDCSF FPDPNLINNL RVNDYFHEDY DPNLINNLRV SDNLVNRNVD ISSPFQSDFG RNTLVPSTAD DFHEDYDFSD GVLKYINQML
101: MEEDIEEKTC MFQESAALQA AERSFYEVIG EKYPSSANCE KPSSLSQNER YAMDHYSGNG GRDSLLCPNW ILDLGEDDVS HVPDGVALHP TSRSSNSLSG
201: TAPDVPVDSP VSTLRIPDIF SDGESVMQFK KGMEEASKFL PTGNSLLADV RYNVVGKELQ YKERKDAVVK VDKYGEKQYT ERSRGKKNTL HEGIVDLPEG
301: RNYKQSAVFS ESTVRSEMFD RVLLCSGGKN ESALREALQA ISRQNASKNG PSKGANGKKL QGKKKGGKRD VVDLRTLLTL CAQAVAVGNQ RTANELLKQI
401: RESSSPMGDG MQRLAHYFAD GLEARMAGSG THIYKALITR PVSATDVLKA YHLLLAACPF RTISSFFSNK TIMNLAEKAS TVHIIDIGIM WGFQWPGLIQ
501: RLASRPGGPP KLRITGIDFP NPGFRPAERV EETGKRLANY AESFKVPFEF NAIAQKWETV KLEDLKINKG EVLVVNCLYR FRNLLDETVV VNSPRDVFLN
601: LIRRLNPDVF IQGTVNGGYN APFFISRFRE ALFHYSSLFD MLETIIPREV HERMLIEKNI LGQEAMNAIA CEGAERIERP ETYKQWQVRI LNAGFRQLPL
701: DEEIMRMTTE RFKVYDKNFI IDNDSEWLLQ GWKGRISFAL STWKAAY
101: MEEDIEEKTC MFQESAALQA AERSFYEVIG EKYPSSANCE KPSSLSQNER YAMDHYSGNG GRDSLLCPNW ILDLGEDDVS HVPDGVALHP TSRSSNSLSG
201: TAPDVPVDSP VSTLRIPDIF SDGESVMQFK KGMEEASKFL PTGNSLLADV RYNVVGKELQ YKERKDAVVK VDKYGEKQYT ERSRGKKNTL HEGIVDLPEG
301: RNYKQSAVFS ESTVRSEMFD RVLLCSGGKN ESALREALQA ISRQNASKNG PSKGANGKKL QGKKKGGKRD VVDLRTLLTL CAQAVAVGNQ RTANELLKQI
401: RESSSPMGDG MQRLAHYFAD GLEARMAGSG THIYKALITR PVSATDVLKA YHLLLAACPF RTISSFFSNK TIMNLAEKAS TVHIIDIGIM WGFQWPGLIQ
501: RLASRPGGPP KLRITGIDFP NPGFRPAERV EETGKRLANY AESFKVPFEF NAIAQKWETV KLEDLKINKG EVLVVNCLYR FRNLLDETVV VNSPRDVFLN
601: LIRRLNPDVF IQGTVNGGYN APFFISRFRE ALFHYSSLFD MLETIIPREV HERMLIEKNI LGQEAMNAIA CEGAERIERP ETYKQWQVRI LNAGFRQLPL
701: DEEIMRMTTE RFKVYDKNFI IDNDSEWLLQ GWKGRISFAL STWKAAY
001: MGSYPDGFPG SMDELDFNKD FDLPPSSNQT LGLANGFYLD DLDFSSLDPP EAYPSQNNNN NNINNKAVAG DLLSSSSDDA DFSDSVLKYI SQVLMEEDME
101: EKPCMFHDAL ALQAAEKSLY EALGEKYPSS SSASSVDHPE RLASDSPDGS CSGGAFSDYA STTTTTSSDS HWSVDGLENR PSWLHTPMPS NFVFQSTSRS
201: NSVTGGGGGG NSAVYGSGFG DDLVSNMFKD DELAMQFKKG VEEASKFLPK SSQLFIDVDS YIPMNSGSKE NGSEVFVKTE KKDETEHHHH HSYAPPPNRL
301: TGKKSHWRDE DEDFVEERSN KQSAVYVEES ELSEMFDKIL VCGPGKPVCI LNQNFPTESA KVVTAQSNGA KIRGKKSTST SHSNDSKKET ADLRTLLVLC
401: AQAVSVDDRR TANEMLRQIR EHSSPLGNGS ERLAHYFANS LEARLAGTGT QIYTALSSKK TSAADMLKAY QTYMSVCPFK KAAIIFANHS MMRFTANANT
501: IHIIDFGISY GFQWPALIHR LSLSRPGGSP KLRITGIELP QRGFRPAEGV QETGHRLARY CQRHNVPFEY NAIAQKWETI QVEDLKLRQG EYVVVNSLFR
601: FRNLLDETVL VNSPRDAVLK LIRKINPNVF IPAILSGNYN APFFVTRFRE ALFHYSAVFD MCDSKLARED EMRLMYEKEF YGREIVNVVA CEGTERVERP
701: ETYKQWQARL IRAGFRQLPL EKELMQNLKL KIENGYDKNF DVDQNGNWLL QGWKGRIVYA SSLWVPSSS
101: EKPCMFHDAL ALQAAEKSLY EALGEKYPSS SSASSVDHPE RLASDSPDGS CSGGAFSDYA STTTTTSSDS HWSVDGLENR PSWLHTPMPS NFVFQSTSRS
201: NSVTGGGGGG NSAVYGSGFG DDLVSNMFKD DELAMQFKKG VEEASKFLPK SSQLFIDVDS YIPMNSGSKE NGSEVFVKTE KKDETEHHHH HSYAPPPNRL
301: TGKKSHWRDE DEDFVEERSN KQSAVYVEES ELSEMFDKIL VCGPGKPVCI LNQNFPTESA KVVTAQSNGA KIRGKKSTST SHSNDSKKET ADLRTLLVLC
401: AQAVSVDDRR TANEMLRQIR EHSSPLGNGS ERLAHYFANS LEARLAGTGT QIYTALSSKK TSAADMLKAY QTYMSVCPFK KAAIIFANHS MMRFTANANT
501: IHIIDFGISY GFQWPALIHR LSLSRPGGSP KLRITGIELP QRGFRPAEGV QETGHRLARY CQRHNVPFEY NAIAQKWETI QVEDLKLRQG EYVVVNSLFR
601: FRNLLDETVL VNSPRDAVLK LIRKINPNVF IPAILSGNYN APFFVTRFRE ALFHYSAVFD MCDSKLARED EMRLMYEKEF YGREIVNVVA CEGTERVERP
701: ETYKQWQARL IRAGFRQLPL EKELMQNLKL KIENGYDKNF DVDQNGNWLL QGWKGRIVYA SSLWVPSSS
Arabidopsis Description
SCL14SCL14 [Source:UniProtKB/TrEMBL;Acc:A0A178WH17]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.