Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g082530.1.1 | Tomato | cytosol | 91.9 | 93.87 |
| Bra002564.1-P | Field mustard | endoplasmic reticulum, golgi | 25.19 | 53.0 |
| CDX68389 | Canola | cytosol | 6.75 | 52.94 |
| CDX80265 | Canola | endoplasmic reticulum, golgi | 24.89 | 52.37 |
| VIT_06s0004g04990.t01 | Wine grape | cytosol | 34.63 | 52.26 |
| PGSC0003DMT400063769 | Potato | cytosol, nucleus, peroxisome | 44.68 | 46.13 |
| PGSC0003DMT400005480 | Potato | cytosol | 32.68 | 44.76 |
| Zm00001d034664_P001 | Maize | plastid | 37.33 | 44.54 |
| VIT_06s0004g04970.t01 | Wine grape | cytosol | 43.78 | 44.38 |
| TraesCS1B01G037500.1 | Wheat | cytosol | 26.69 | 43.1 |
| AT3G46600.1 | Thale cress | cytosol | 37.63 | 43.05 |
| KRH10240 | Soybean | cytosol | 38.98 | 42.9 |
| Bra033813.1-P | Field mustard | nucleus | 37.33 | 42.78 |
| KRH24773 | Soybean | nucleus | 43.78 | 42.5 |
| VIT_06s0004g04980.t01 | Wine grape | nucleus | 44.83 | 42.47 |
| KRH29771 | Soybean | cytosol | 43.18 | 42.35 |
| CDX82987 | Canola | nucleus | 37.63 | 41.76 |
| KRH23095 | Soybean | cytosol | 41.08 | 41.7 |
| HORVU3Hr1G012520.1 | Barley | cytosol | 28.19 | 41.23 |
| CDY33040 | Canola | nucleus | 36.88 | 41.21 |
| Os04t0590400-01 | Rice | cytosol, nucleus, peroxisome | 39.28 | 41.2 |
| PGSC0003DMT400049420 | Potato | cytosol | 40.93 | 41.11 |
| GSMUA_Achr10P... | Banana | nucleus | 26.99 | 40.72 |
| KXG37250 | Sorghum | cytosol | 39.58 | 40.55 |
| KRH23094 | Soybean | cytosol | 33.28 | 40.14 |
| AT5G59450.1 | Thale cress | nucleus | 36.13 | 39.51 |
| HORVU5Hr1G113620.1 | Barley | cytosol, nucleus, peroxisome | 37.93 | 39.29 |
| TraesCS5A01G481300.1 | Wheat | cytosol | 38.38 | 39.08 |
| TraesCS5B01G494500.1 | Wheat | cytosol | 38.38 | 38.97 |
| TraesCS5D01G494900.1 | Wheat | cytosol | 38.38 | 38.97 |
| PGSC0003DMT400016258 | Potato | cytosol | 42.43 | 38.87 |
| GSMUA_Achr10P... | Banana | cytosol | 34.33 | 38.23 |
| CDX68388 | Canola | cytosol | 23.69 | 38.16 |
| GSMUA_Achr6P34090_001 | Banana | nucleus | 34.63 | 37.75 |
| GSMUA_Achr7P15080_001 | Banana | cytosol | 33.58 | 37.46 |
| Zm00001d011070_P001 | Maize | cytosol | 35.08 | 37.32 |
| PGSC0003DMT400077972 | Potato | cytosol | 41.68 | 36.97 |
| KXG21080 | Sorghum | cytosol | 34.63 | 36.9 |
| PGSC0003DMT400022997 | Potato | cytosol, plastid | 41.98 | 36.79 |
| KXG38103 | Sorghum | cytosol | 34.33 | 36.58 |
| Os03t0690600-03 | Rice | cytosol | 40.03 | 36.53 |
| Zm00001d028603_P001 | Maize | cytosol | 39.88 | 36.24 |
| GSMUA_Achr8P02550_001 | Banana | nucleus | 21.29 | 36.22 |
| OQU92829 | Sorghum | cytosol | 39.43 | 35.83 |
| PGSC0003DMT400069949 | Potato | cytosol | 39.88 | 35.61 |
| KXG21079 | Sorghum | cytosol | 32.98 | 35.31 |
| Zm00001d035671_P001 | Maize | cytosol | 33.13 | 35.3 |
| HORVU3Hr1G012550.6 | Barley | cytosol | 31.03 | 34.73 |
| TraesCS5D01G152700.1 | Wheat | cytosol, plastid | 37.93 | 32.69 |
| TraesCS5A01G139000.1 | Wheat | cytosol, plastid | 37.93 | 32.6 |
| HORVU5Hr1G045020.29 | Barley | cytosol | 38.38 | 32.53 |
| TraesCS5B01G138100.1 | Wheat | cytosol, plastid | 37.78 | 32.47 |
| TraesCS1D01G030900.1 | Wheat | cytosol | 34.03 | 31.84 |
| TraesCS3D01G067900.1 | Wheat | nucleus | 32.83 | 31.74 |
| Zm00001d047813_P002 | Maize | nucleus | 39.43 | 31.73 |
| GSMUA_AchrUn_... | Banana | cytosol | 31.33 | 31.71 |
| TraesCS1B01G037300.1 | Wheat | cytosol | 33.13 | 31.39 |
| HORVU1Hr1G004440.1 | Barley | cytosol | 33.28 | 30.88 |
| TraesCS3B01G081100.1 | Wheat | nucleus | 32.98 | 30.77 |
| TraesCS1A01G030300.1 | Wheat | cytosol | 32.53 | 30.74 |
| TraesCS3A01G068000.1 | Wheat | nucleus | 32.83 | 30.59 |
| OQU91407 | Sorghum | nucleus | 31.33 | 30.47 |
| EES18882 | Sorghum | cytosol | 33.28 | 30.29 |
| TraesCS1D01G030800.1 | Wheat | cytosol | 31.63 | 30.1 |
| EER91260 | Sorghum | nucleus | 32.53 | 30.1 |
| TraesCS1D01G031000.1 | Wheat | cytosol | 32.68 | 30.07 |
| TraesCS3D01G067700.1 | Wheat | cytosol | 32.53 | 30.06 |
| TraesCS1B01G037400.1 | Wheat | cytosol | 32.53 | 30.01 |
| TraesCS1A01G030200.1 | Wheat | cytosol | 32.23 | 29.82 |
| TraesCS1D01G031200.1 | Wheat | cytosol | 32.53 | 29.77 |
| TraesCS3B01G080900.1 | Wheat | nucleus | 32.08 | 29.68 |
| Zm00001d035670_P001 | Maize | cytosol | 32.23 | 29.61 |
| Zm00001d033166_P001 | Maize | nucleus | 32.38 | 29.51 |
| TraesCS3A01G067900.1 | Wheat | cytosol | 31.93 | 29.5 |
| KXG38064 | Sorghum | nucleus | 31.33 | 29.03 |
| TraesCS3B01G081000.1 | Wheat | cytosol | 31.63 | 28.98 |
| TraesCS3D01G067800.1 | Wheat | nucleus | 29.24 | 28.85 |
| EES18880 | Sorghum | cytosol | 31.63 | 28.48 |
| OQU91406 | Sorghum | nucleus | 31.63 | 28.21 |
| TraesCS1B01G037200.1 | Wheat | nucleus | 30.88 | 27.21 |
| PGSC0003DMT400060553 | Potato | cytosol | 19.94 | 25.38 |
| PGSC0003DMT400015696 | Potato | cytosol | 19.79 | 24.67 |
| PGSC0003DMT400034763 | Potato | cytosol | 19.49 | 24.34 |
| PGSC0003DMT400021748 | Potato | nucleus | 20.09 | 23.97 |
| PGSC0003DMT400056120 | Potato | cytosol | 19.79 | 23.61 |
| PGSC0003DMT400057111 | Potato | nucleus | 18.74 | 23.28 |
| PGSC0003DMT400049492 | Potato | cytosol | 20.09 | 23.02 |
| PGSC0003DMT400063944 | Potato | cytosol, mitochondrion | 17.09 | 20.39 |
| PGSC0003DMT400076932 | Potato | nucleus | 16.19 | 17.82 |
| PGSC0003DMT400026240 | Potato | nucleus, plastid | 15.44 | 15.75 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400078286 | EnsemblPlantsGene:PGSC0003DMG400030468 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR005202 | InterPro:TF_GRAS | PANTHER:PTHR31636 |
| PANTHER:PTHR31636:SF56 | PFAM:PF03514 | PFscan:PS50985 | PGSC:PGSC0003DMG400030468 | SEG:seg | UniParc:UPI000296CA0B |
| UniProt:M1CZT4 | MapMan:15.5.12 | : | : | : | : |
Description
GRAS4 [Source:PGSC_GENE;Acc:PGSC0003DMG400030468]
Coordinates
chr6:-:57636790..57638946
Molecular Weight (calculated)
75181.1 Da
IEP (calculated)
6.126
GRAVY (calculated)
-0.565
Length
667 amino acids
Sequence
(BLAST)
(BLAST)
001: MNTGSHFPGD HRSSDGFEFC HRFGGGGGGG GGVNDVLCFS SRRPSEEEVV IGSGSDRTVV QGDYFDGVFK YIHQMLMEDQ EDLENRPCMF QDCIALQAAE
101: KSFYDALNPP PIHHDFVDDS GNQFQDDYCD AVNQFVETTF NSDLDADQCS LFYNTNICQG VGDGISVVNG GASNAINYHQ VNDVNQGGIP SSDGNKKHTR
201: DENNDSSKGR KSKQLASNGT EETEDGKTEE HYDKALLCPG LNPSFYENRS KSATASDNAA WDKQKSSHIK QSKRGRPRGS KKGVKTNEVV DLTSLLTRCA
301: EAAASYNSKT FIEVLKKIRE HSSPFGDATS RLAYCFANAL EARFAGGDAT LITSKKISSA DFLKAYQVYI TACPFKRMSN IFANKSIAKL TSESSRIHII
401: DFGILYGFQW PCIIHGISLR PGGPPKLKIT GIDFPQPGFR PAERVEETGR RLKDYCKRFD VPFEYKAIAK KWDEITLEDL DIDRDEIVVV NCLYRLKNVP
501: DETVVTHNNK NPRDAVLNLI KEINPHYFVH GIVNAMYNAS FFTTRFREAL FHFSSQFDMF EATMPREDEG RMTFEQEVFG RDIMNVIASE GAERVERPES
601: FKKWSMRNQI AGFRQLPLDQ DIVKEVKTKV KMFYHADFLV DEDSNWMLQG WKGRIMYALS VWEPIHK
101: KSFYDALNPP PIHHDFVDDS GNQFQDDYCD AVNQFVETTF NSDLDADQCS LFYNTNICQG VGDGISVVNG GASNAINYHQ VNDVNQGGIP SSDGNKKHTR
201: DENNDSSKGR KSKQLASNGT EETEDGKTEE HYDKALLCPG LNPSFYENRS KSATASDNAA WDKQKSSHIK QSKRGRPRGS KKGVKTNEVV DLTSLLTRCA
301: EAAASYNSKT FIEVLKKIRE HSSPFGDATS RLAYCFANAL EARFAGGDAT LITSKKISSA DFLKAYQVYI TACPFKRMSN IFANKSIAKL TSESSRIHII
401: DFGILYGFQW PCIIHGISLR PGGPPKLKIT GIDFPQPGFR PAERVEETGR RLKDYCKRFD VPFEYKAIAK KWDEITLEDL DIDRDEIVVV NCLYRLKNVP
501: DETVVTHNNK NPRDAVLNLI KEINPHYFVH GIVNAMYNAS FFTTRFREAL FHFSSQFDMF EATMPREDEG RMTFEQEVFG RDIMNVIASE GAERVERPES
601: FKKWSMRNQI AGFRQLPLDQ DIVKEVKTKV KMFYHADFLV DEDSNWMLQG WKGRIMYALS VWEPIHK
001: MDAILPVPVD GFRFDTGSGS CCKPRNNLES GTTNRFTCFN ESESQSNPSP TESKVCSDYL PVFKYINDML MEEDLEGQSC MLEDSLALQA AERSFFEVLQ
101: DQTPISGDLE DGSLGNFSSI TSLHQPEVSE ESTRRYRHRD DDEDDDLESG RKSKLPAIST VDELAEKFEE VLLVCQKNDQ GEATEKKTRH VKGSSNRYKQ
201: QKSDQPVDMR NLLMQCAQAV ASFDQRRAFE KLKEIREHSS RHGDATQRLG YHFAEALEAR ITGTMTTPIS ATSSRTSMVD ILKAYKGFVQ ACPTLIMCYF
301: TANRTINELA SKATTLHIID FGILYGFQWP CLIQALSKRD IGPPLLRVTG IELPQSGFRP SERVEETGRR LKRFCDKFNV PFEYSFIAKN WENITLDDLV
401: INSGETTVVN CILRLQYTPD ETVSLNSPRD TALKLFRDIN PDLFVFAEIN GTYNSPFFLT RFREALFHCS SLFDMYETTL SEDDNCRTLV ERELIIRDAM
501: SVIACEGSER FARPETYKQW QVRILRAGFR PAKLSKQIVK DGKEIVKERY HKDFVIDNDN HWMFQGWKGR VLYAVSCWKP AKK
101: DQTPISGDLE DGSLGNFSSI TSLHQPEVSE ESTRRYRHRD DDEDDDLESG RKSKLPAIST VDELAEKFEE VLLVCQKNDQ GEATEKKTRH VKGSSNRYKQ
201: QKSDQPVDMR NLLMQCAQAV ASFDQRRAFE KLKEIREHSS RHGDATQRLG YHFAEALEAR ITGTMTTPIS ATSSRTSMVD ILKAYKGFVQ ACPTLIMCYF
301: TANRTINELA SKATTLHIID FGILYGFQWP CLIQALSKRD IGPPLLRVTG IELPQSGFRP SERVEETGRR LKRFCDKFNV PFEYSFIAKN WENITLDDLV
401: INSGETTVVN CILRLQYTPD ETVSLNSPRD TALKLFRDIN PDLFVFAEIN GTYNSPFFLT RFREALFHCS SLFDMYETTL SEDDNCRTLV ERELIIRDAM
501: SVIACEGSER FARPETYKQW QVRILRAGFR PAKLSKQIVK DGKEIVKERY HKDFVIDNDN HWMFQGWKGR VLYAVSCWKP AKK
Arabidopsis Description
SCL30Scarecrow-like protein 30 [Source:UniProtKB/Swiss-Prot;Acc:Q9SNB8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.