Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 1
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX68389 | Canola | cytosol | 13.21 | 90.59 |
| Bra033813.1-P | Field mustard | nucleus | 82.5 | 82.65 |
| CDX82987 | Canola | nucleus | 84.22 | 81.7 |
| CDX68388 | Canola | cytosol | 56.78 | 79.95 |
| AT5G59450.1 | Thale cress | nucleus | 68.44 | 65.41 |
| VIT_06s0004g04990.t01 | Wine grape | cytosol | 35.16 | 46.38 |
| PGSC0003DMT400063769 | Potato | cytosol, nucleus, peroxisome | 46.48 | 41.95 |
| KRH10240 | Soybean | cytosol | 43.05 | 41.42 |
| Zm00001d034664_P001 | Maize | plastid | 39.28 | 40.97 |
| Solyc01g100200.2.1 | Tomato | nucleus | 46.48 | 40.69 |
| TraesCS1B01G037500.1 | Wheat | cytosol | 28.13 | 39.71 |
| KRH23095 | Soybean | cytosol | 44.6 | 39.57 |
| KRH23094 | Soybean | cytosol | 36.54 | 38.52 |
| HORVU3Hr1G012520.1 | Barley | cytosol | 30.02 | 38.38 |
| VIT_06s0004g04980.t01 | Wine grape | nucleus | 46.31 | 38.35 |
| KRH24773 | Soybean | nucleus | 45.11 | 38.28 |
| KRH29771 | Soybean | cytosol | 44.43 | 38.09 |
| VIT_06s0004g04970.t01 | Wine grape | cytosol | 42.88 | 37.99 |
| Solyc06g082530.1.1 | Tomato | cytosol | 42.54 | 37.98 |
| KXG37250 | Sorghum | cytosol | 42.2 | 37.79 |
| PGSC0003DMT400078286 | Potato | nucleus | 43.05 | 37.63 |
| Os04t0590400-01 | Rice | cytosol, nucleus, peroxisome | 40.99 | 37.58 |
| GSMUA_Achr10P... | Banana | nucleus | 28.47 | 37.56 |
| GSMUA_Achr10P... | Banana | cytosol | 38.08 | 37.06 |
| HORVU5Hr1G113620.1 | Barley | cytosol, nucleus, peroxisome | 40.31 | 36.49 |
| AT2G29065.1 | Thale cress | cytosol, nucleus, plastid | 39.28 | 36.35 |
| TraesCS5B01G494500.1 | Wheat | cytosol | 39.97 | 35.46 |
| TraesCS5D01G494900.1 | Wheat | cytosol | 39.97 | 35.46 |
| TraesCS5A01G481300.1 | Wheat | cytosol | 39.79 | 35.42 |
| Zm00001d011070_P001 | Maize | cytosol | 37.74 | 35.09 |
| KXG21080 | Sorghum | cytosol | 37.56 | 34.98 |
| KXG38103 | Sorghum | cytosol | 37.22 | 34.66 |
| GSMUA_Achr7P15080_001 | Banana | cytosol | 35.33 | 34.45 |
| Zm00001d035671_P001 | Maize | cytosol | 36.88 | 34.34 |
| KXG21079 | Sorghum | cytosol | 36.36 | 34.03 |
| GSMUA_Achr6P34090_001 | Banana | nucleus | 35.51 | 33.82 |
| Os03t0690600-03 | Rice | cytosol | 42.37 | 33.79 |
| OQU92829 | Sorghum | cytosol | 42.54 | 33.79 |
| AT2G29060.1 | Thale cress | cytosol | 39.97 | 33.57 |
| GSMUA_Achr8P02550_001 | Banana | nucleus | 22.47 | 33.42 |
| Zm00001d028603_P001 | Maize | cytosol | 42.02 | 33.38 |
| AT1G07520.3 | Thale cress | cytosol | 39.62 | 33.19 |
| AT2G37650.1 | Thale cress | cytosol | 40.65 | 33.01 |
| HORVU3Hr1G012550.6 | Barley | cytosol | 32.59 | 31.88 |
| AT1G07530.1 | Thale cress | cytosol | 40.99 | 31.08 |
| TraesCS5D01G152700.1 | Wheat | cytosol, plastid | 39.79 | 29.97 |
| TraesCS5A01G139000.1 | Wheat | cytosol, plastid | 39.79 | 29.9 |
| Zm00001d047813_P002 | Maize | nucleus | 42.37 | 29.79 |
| TraesCS5B01G138100.1 | Wheat | cytosol, plastid | 39.62 | 29.77 |
| HORVU5Hr1G045020.29 | Barley | cytosol | 40.14 | 29.73 |
| TraesCS1B01G037300.1 | Wheat | cytosol | 35.51 | 29.4 |
| Zm00001d035670_P001 | Maize | cytosol | 36.54 | 29.34 |
| TraesCS1D01G030900.1 | Wheat | cytosol | 35.51 | 29.03 |
| GSMUA_AchrUn_... | Banana | cytosol | 32.76 | 28.98 |
| OQU91407 | Sorghum | nucleus | 33.96 | 28.86 |
| TraesCS1D01G030800.1 | Wheat | cytosol | 34.48 | 28.67 |
| EES18882 | Sorghum | cytosol | 35.85 | 28.51 |
| TraesCS1A01G030300.1 | Wheat | cytosol | 34.48 | 28.47 |
| TraesCS3D01G067900.1 | Wheat | nucleus | 33.45 | 28.26 |
| TraesCS1B01G037400.1 | Wheat | cytosol | 34.82 | 28.08 |
| HORVU1Hr1G004440.1 | Barley | cytosol | 34.48 | 27.96 |
| TraesCS1A01G030200.1 | Wheat | cytosol | 34.31 | 27.74 |
| EES18880 | Sorghum | cytosol | 35.16 | 27.67 |
| TraesCS3D01G067800.1 | Wheat | nucleus | 31.73 | 27.37 |
| AT2G04890.1 | Thale cress | cytosol | 19.38 | 27.36 |
| TraesCS3D01G067700.1 | Wheat | cytosol | 33.79 | 27.29 |
| TraesCS3B01G081100.1 | Wheat | nucleus | 33.45 | 27.27 |
| Zm00001d033166_P001 | Maize | nucleus | 34.13 | 27.19 |
| TraesCS3B01G080900.1 | Wheat | nucleus | 33.62 | 27.18 |
| TraesCS1D01G031000.1 | Wheat | cytosol | 33.79 | 27.17 |
| TraesCS1D01G031200.1 | Wheat | cytosol | 33.96 | 27.16 |
| TraesCS3A01G067900.1 | Wheat | cytosol | 33.62 | 27.15 |
| KXG38064 | Sorghum | nucleus | 33.45 | 27.08 |
| TraesCS3B01G081000.1 | Wheat | cytosol | 33.79 | 27.06 |
| TraesCS3A01G068000.1 | Wheat | nucleus | 33.1 | 26.96 |
| EER91260 | Sorghum | nucleus | 33.1 | 26.77 |
| OQU91406 | Sorghum | nucleus | 33.96 | 26.47 |
| AT4G17230.1 | Thale cress | cytosol | 23.16 | 25.52 |
| TraesCS1B01G037200.1 | Wheat | nucleus | 32.76 | 25.23 |
| AT5G48150.4 | Thale cress | cytosol | 20.41 | 24.29 |
| AT1G50600.2 | Thale cress | golgi, mitochondrion | 21.61 | 20.97 |
| AT1G21450.1 | Thale cress | nucleus | 20.24 | 19.9 |
| AT5G52510.1 | Thale cress | nucleus | 18.01 | 16.41 |
Protein Annotations
| MapMan:15.5.12 | EntrezGene:823813 | UniProt:A0A178VNA8 | ProteinID:AEE78178.1 | EMBL:AK226419 | ArrayExpress:AT3G46600 |
| EnsemblPlantsGene:AT3G46600 | RefSeq:AT3G46600 | TAIR:AT3G46600 | RefSeq:AT3G46600-TAIR-G | EnsemblPlants:AT3G46600.1 | TAIR:AT3G46600.1 |
| EMBL:AY087418 | ProteinID:CAB62330.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 |
| GO:GO:0009987 | GO:GO:0010200 | GO:GO:0043565 | InterPro:IPR005202 | RefSeq:NP_190244.1 | ProteinID:OAP06563.1 |
| PFAM:PF03514 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PFscan:PS50985 | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF56 | UniProt:Q9SNB8 | InterPro:TF_GRAS |
| UniParc:UPI000009F9A4 | SEG:seg | : | : | : | : |
Description
SCL30Scarecrow-like protein 30 [Source:UniProtKB/Swiss-Prot;Acc:Q9SNB8]
Coordinates
chr3:+:17157585..17159965
Molecular Weight (calculated)
66632.8 Da
IEP (calculated)
5.484
GRAVY (calculated)
-0.509
Length
583 amino acids
Sequence
(BLAST)
(BLAST)
001: MDAILPVPVD GFRFDTGSGS CCKPRNNLES GTTNRFTCFN ESESQSNPSP TESKVCSDYL PVFKYINDML MEEDLEGQSC MLEDSLALQA AERSFFEVLQ
101: DQTPISGDLE DGSLGNFSSI TSLHQPEVSE ESTRRYRHRD DDEDDDLESG RKSKLPAIST VDELAEKFEE VLLVCQKNDQ GEATEKKTRH VKGSSNRYKQ
201: QKSDQPVDMR NLLMQCAQAV ASFDQRRAFE KLKEIREHSS RHGDATQRLG YHFAEALEAR ITGTMTTPIS ATSSRTSMVD ILKAYKGFVQ ACPTLIMCYF
301: TANRTINELA SKATTLHIID FGILYGFQWP CLIQALSKRD IGPPLLRVTG IELPQSGFRP SERVEETGRR LKRFCDKFNV PFEYSFIAKN WENITLDDLV
401: INSGETTVVN CILRLQYTPD ETVSLNSPRD TALKLFRDIN PDLFVFAEIN GTYNSPFFLT RFREALFHCS SLFDMYETTL SEDDNCRTLV ERELIIRDAM
501: SVIACEGSER FARPETYKQW QVRILRAGFR PAKLSKQIVK DGKEIVKERY HKDFVIDNDN HWMFQGWKGR VLYAVSCWKP AKK
101: DQTPISGDLE DGSLGNFSSI TSLHQPEVSE ESTRRYRHRD DDEDDDLESG RKSKLPAIST VDELAEKFEE VLLVCQKNDQ GEATEKKTRH VKGSSNRYKQ
201: QKSDQPVDMR NLLMQCAQAV ASFDQRRAFE KLKEIREHSS RHGDATQRLG YHFAEALEAR ITGTMTTPIS ATSSRTSMVD ILKAYKGFVQ ACPTLIMCYF
301: TANRTINELA SKATTLHIID FGILYGFQWP CLIQALSKRD IGPPLLRVTG IELPQSGFRP SERVEETGRR LKRFCDKFNV PFEYSFIAKN WENITLDDLV
401: INSGETTVVN CILRLQYTPD ETVSLNSPRD TALKLFRDIN PDLFVFAEIN GTYNSPFFLT RFREALFHCS SLFDMYETTL SEDDNCRTLV ERELIIRDAM
501: SVIACEGSER FARPETYKQW QVRILRAGFR PAKLSKQIVK DGKEIVKERY HKDFVIDNDN HWMFQGWKGR VLYAVSCWKP AKK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.