Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- peroxisome 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX79750 | Canola | peroxisome | 80.36 | 85.61 |
| CDY07777 | Canola | cytosol, nucleus, peroxisome | 80.08 | 85.44 |
| Bra000012.1-P | Field mustard | cytosol, nucleus, peroxisome | 80.08 | 85.44 |
| PGSC0003DMT400049420 | Potato | cytosol | 50.0 | 54.07 |
| VIT_08s0007g00510.t01 | Wine grape | cytosol, plastid | 49.58 | 50.21 |
| GSMUA_Achr10P... | Banana | nucleus | 30.64 | 49.77 |
| KRH65839 | Soybean | cytosol, plastid | 50.56 | 49.73 |
| KRG99969 | Soybean | cytosol | 50.42 | 49.12 |
| KRH49113 | Soybean | cytosol | 50.14 | 49.05 |
| Solyc10g086530.1.1 | Tomato | cytosol | 51.11 | 48.23 |
| PGSC0003DMT400022997 | Potato | cytosol, plastid | 50.7 | 47.83 |
| Solyc09g010920.1.1 | Tomato | cytosol | 50.42 | 47.57 |
| GSMUA_Achr10P... | Banana | cytosol | 39.0 | 46.74 |
| GSMUA_Achr8P02550_001 | Banana | nucleus | 25.49 | 46.68 |
| Zm00001d034664_P001 | Maize | plastid | 34.96 | 44.9 |
| GSMUA_Achr6P34090_001 | Banana | nucleus | 37.88 | 44.44 |
| HORVU3Hr1G012520.1 | Barley | cytosol | 28.13 | 44.3 |
| TraesCS1B01G037500.1 | Wheat | cytosol | 25.21 | 43.83 |
| GSMUA_Achr7P15080_001 | Banana | cytosol | 36.49 | 43.81 |
| Os04t0590400-01 | Rice | cytosol, nucleus, peroxisome | 37.88 | 42.77 |
| Os03t0690600-03 | Rice | cytosol | 43.31 | 42.54 |
| OQU92829 | Sorghum | cytosol | 43.45 | 42.51 |
| Zm00001d028603_P001 | Maize | cytosol | 43.31 | 42.37 |
| HORVU5Hr1G113620.1 | Barley | cytosol, nucleus, peroxisome | 37.47 | 41.77 |
| TraesCS5A01G481300.1 | Wheat | cytosol | 37.88 | 41.53 |
| TraesCS5D01G494900.1 | Wheat | cytosol | 37.88 | 41.4 |
| TraesCS5B01G494500.1 | Wheat | cytosol | 37.74 | 41.25 |
| KXG37250 | Sorghum | cytosol | 37.19 | 41.01 |
| AT3G46600.1 | Thale cress | cytosol | 33.01 | 40.65 |
| KXG38103 | Sorghum | cytosol | 35.1 | 40.26 |
| AT2G29065.1 | Thale cress | cytosol, nucleus, plastid | 34.82 | 39.68 |
| AT2G29060.1 | Thale cress | cytosol | 38.3 | 39.63 |
| KXG21079 | Sorghum | cytosol | 34.26 | 39.49 |
| AT5G59450.1 | Thale cress | nucleus | 33.43 | 39.34 |
| KXG21080 | Sorghum | cytosol | 34.26 | 39.3 |
| Zm00001d011070_P001 | Maize | cytosol | 34.12 | 39.08 |
| Zm00001d035671_P001 | Maize | cytosol | 33.98 | 38.98 |
| TraesCS5D01G152700.1 | Wheat | cytosol, plastid | 41.78 | 38.76 |
| TraesCS5A01G139000.1 | Wheat | cytosol, plastid | 41.78 | 38.66 |
| TraesCS5B01G138100.1 | Wheat | cytosol, plastid | 41.64 | 38.53 |
| HORVU5Hr1G045020.29 | Barley | cytosol | 42.06 | 38.37 |
| HORVU3Hr1G012550.6 | Barley | cytosol | 31.75 | 38.26 |
| AT1G07530.1 | Thale cress | cytosol | 40.81 | 38.1 |
| GSMUA_AchrUn_... | Banana | cytosol | 34.96 | 38.09 |
| Zm00001d047813_P002 | Maize | nucleus | 43.59 | 37.76 |
| AT1G07520.3 | Thale cress | cytosol | 34.4 | 35.49 |
| Zm00001d035670_P001 | Maize | cytosol | 35.52 | 35.12 |
| TraesCS3D01G067900.1 | Wheat | nucleus | 33.57 | 34.93 |
| EES18882 | Sorghum | cytosol | 35.52 | 34.79 |
| OQU91407 | Sorghum | nucleus | 32.73 | 34.26 |
| TraesCS1B01G037300.1 | Wheat | cytosol | 33.57 | 34.23 |
| EES18880 | Sorghum | cytosol | 35.24 | 34.14 |
| EER91260 | Sorghum | nucleus | 34.26 | 34.12 |
| TraesCS3D01G067700.1 | Wheat | cytosol | 33.84 | 33.66 |
| TraesCS1D01G030900.1 | Wheat | cytosol | 33.29 | 33.52 |
| TraesCS3A01G068000.1 | Wheat | nucleus | 33.43 | 33.52 |
| TraesCS1D01G031000.1 | Wheat | cytosol | 33.84 | 33.52 |
| TraesCS3B01G081100.1 | Wheat | nucleus | 33.29 | 33.43 |
| TraesCS3B01G080900.1 | Wheat | nucleus | 33.57 | 33.43 |
| HORVU1Hr1G004440.1 | Barley | cytosol | 33.29 | 33.24 |
| Zm00001d033166_P001 | Maize | nucleus | 33.84 | 33.2 |
| TraesCS1D01G030800.1 | Wheat | cytosol | 32.17 | 32.95 |
| TraesCS1B01G037400.1 | Wheat | cytosol | 33.15 | 32.92 |
| TraesCS3D01G067800.1 | Wheat | nucleus | 30.92 | 32.84 |
| TraesCS3A01G067900.1 | Wheat | cytosol | 32.87 | 32.69 |
| KXG38064 | Sorghum | nucleus | 32.73 | 32.64 |
| TraesCS1A01G030300.1 | Wheat | cytosol | 31.48 | 32.01 |
| TraesCS3B01G081000.1 | Wheat | cytosol | 32.45 | 32.01 |
| OQU91406 | Sorghum | nucleus | 33.15 | 31.82 |
| TraesCS1A01G030200.1 | Wheat | cytosol | 31.48 | 31.35 |
| TraesCS1D01G031200.1 | Wheat | cytosol | 31.48 | 31.0 |
| TraesCS1B01G037200.1 | Wheat | nucleus | 31.34 | 29.72 |
| AT2G04890.1 | Thale cress | cytosol | 16.57 | 28.81 |
| AT5G48150.4 | Thale cress | cytosol | 18.11 | 26.53 |
| AT4G17230.1 | Thale cress | cytosol | 19.5 | 26.46 |
| AT1G50600.2 | Thale cress | golgi, mitochondrion | 19.5 | 23.29 |
| AT1G21450.1 | Thale cress | nucleus | 16.57 | 20.07 |
| AT5G52510.1 | Thale cress | nucleus | 13.65 | 15.31 |
Protein Annotations
| MapMan:15.5.12 | EntrezGene:818342 | ProteinID:AAC23635.1 | ProteinID:AEC09430.1 | EMBL:AF036306 | ProteinID:ANM61489.1 |
| ArrayExpress:AT2G37650 | EnsemblPlantsGene:AT2G37650 | RefSeq:AT2G37650 | TAIR:AT2G37650 | RefSeq:AT2G37650-TAIR-G | EnsemblPlants:AT2G37650.1 |
| TAIR:AT2G37650.1 | Unigene:At.66411 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0043565 | InterPro:IPR005202 | RefSeq:NP_001323705.1 | RefSeq:NP_181301.1 | UniProt:O80933 | PFAM:PF03514 |
| PO:PO:0000013 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0025022 | PFscan:PS50985 | PANTHER:PTHR31636 |
| PANTHER:PTHR31636:SF44 | InterPro:TF_GRAS | UniParc:UPI00000A3AF3 | SEG:seg | : | : |
Description
SCL9Scarecrow-like protein 9 [Source:UniProtKB/Swiss-Prot;Acc:O80933]
Coordinates
chr2:+:15792545..15795235
Molecular Weight (calculated)
80919.0 Da
IEP (calculated)
6.326
GRAVY (calculated)
-0.430
Length
718 amino acids
Sequence
(BLAST)
(BLAST)
001: MITEPSLTGI SGMVNRNRLS GLPDQPSSHS FTPVTLYDGF NYNLSSDHIN TVVAAPENSV FIREEEEEED PADDFDFSDA VLGYISQMLN EEDMDDKVCM
101: LQESLDLEAA ERSLYEAIGK KYPPSPERNL AFAERNSENL DRVVPGNYTG GDCIGFGNGG IKPLSSGFTL DFRNPQSCSS ILSVPQSNGL ITIYGDGIDE
201: SSKNNRENHQ SVWLFRREIE EANRFNPEEN ELIVNFREEN CVSKARKNSS RDEICVEEER SSKLPAVFGE DILRSDVVDK ILVHVPGGES MKEFNALRDV
301: LKKGVEKKKA SDAQGGKRRA RGRGRGRGRG GGGGQNGKKE VVDLRSLLIH CAQAVAADDR RCAGQLLKQI RLHSTPFGDG NQRLAHCFAN GLEARLAGTG
401: SQIYKGIVSK PRSAAAVLKA HQLFLACCPF RKLSYFITNK TIRDLVGNSQ RVHVIDFGIL YGFQWPTLIH RFSMYGSPKV RITGIEFPQP GFRPAQRVEE
501: TGQRLAAYAK LFGVPFEYKA IAKKWDAIQL EDLDIDRDEI TVVNCLYRAE NLHDESVKVE SCRDTVLNLI GKINPDLFVF GIVNGAYNAP FFVTRFREAL
601: FHFSSIFDML ETIVPREDEE RMFLEMEVFG REALNVIACE GWERVERPET YKQWHVRAMR SGLVQVPFDP SIMKTSLHKV HTFYHKDFVI DQDNRWLLQG
701: WKGRTVMALS VWKPESKA
101: LQESLDLEAA ERSLYEAIGK KYPPSPERNL AFAERNSENL DRVVPGNYTG GDCIGFGNGG IKPLSSGFTL DFRNPQSCSS ILSVPQSNGL ITIYGDGIDE
201: SSKNNRENHQ SVWLFRREIE EANRFNPEEN ELIVNFREEN CVSKARKNSS RDEICVEEER SSKLPAVFGE DILRSDVVDK ILVHVPGGES MKEFNALRDV
301: LKKGVEKKKA SDAQGGKRRA RGRGRGRGRG GGGGQNGKKE VVDLRSLLIH CAQAVAADDR RCAGQLLKQI RLHSTPFGDG NQRLAHCFAN GLEARLAGTG
401: SQIYKGIVSK PRSAAAVLKA HQLFLACCPF RKLSYFITNK TIRDLVGNSQ RVHVIDFGIL YGFQWPTLIH RFSMYGSPKV RITGIEFPQP GFRPAQRVEE
501: TGQRLAAYAK LFGVPFEYKA IAKKWDAIQL EDLDIDRDEI TVVNCLYRAE NLHDESVKVE SCRDTVLNLI GKINPDLFVF GIVNGAYNAP FFVTRFREAL
601: FHFSSIFDML ETIVPREDEE RMFLEMEVFG REALNVIACE GWERVERPET YKQWHVRAMR SGLVQVPFDP SIMKTSLHKV HTFYHKDFVI DQDNRWLLQG
701: WKGRTVMALS VWKPESKA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.