Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G067900.1 | Wheat | nucleus | 91.62 | 95.07 |
| TraesCS3B01G081100.1 | Wheat | nucleus | 94.41 | 94.55 |
| HORVU3Hr1G012550.6 | Barley | cytosol | 73.74 | 88.59 |
| TraesCS3A01G067900.1 | Wheat | cytosol | 78.07 | 77.42 |
| OQU91407 | Sorghum | nucleus | 53.07 | 55.39 |
| KXG38064 | Sorghum | nucleus | 54.61 | 54.31 |
| EER91260 | Sorghum | nucleus | 54.47 | 54.09 |
| Zm00001d033166_P001 | Maize | nucleus | 53.49 | 52.32 |
| OQU91406 | Sorghum | nucleus | 53.77 | 51.47 |
| CDX68389 | Canola | cytosol | 5.87 | 49.41 |
| Solyc04g011630.1.1 | Tomato | cytosol | 11.59 | 48.82 |
| VIT_06s0004g04990.t01 | Wine grape | cytosol | 27.79 | 45.02 |
| Bra002564.1-P | Field mustard | endoplasmic reticulum, golgi | 19.41 | 43.85 |
| CDX80265 | Canola | endoplasmic reticulum, golgi | 19.27 | 43.53 |
| TraesCS5A01G505900.1 | Wheat | cytosol | 23.32 | 41.23 |
| TraesCS4A01G176400.1 | Wheat | cytosol | 27.65 | 39.76 |
| PGSC0003DMT400049420 | Potato | cytosol | 35.61 | 38.4 |
| PGSC0003DMT400005480 | Potato | cytosol | 26.12 | 38.4 |
| TraesCS1A01G030300.1 | Wheat | cytosol | 37.85 | 38.39 |
| Bra015584.1-P | Field mustard | cytosol | 23.04 | 37.84 |
| CDY71578 | Canola | nucleus, plastid | 27.37 | 37.62 |
| VIT_13s0019g01780.t01 | Wine grape | nucleus | 31.42 | 37.5 |
| TraesCS1A01G030200.1 | Wheat | cytosol | 37.57 | 37.31 |
| GSMUA_Achr8P02550_001 | Banana | nucleus | 20.39 | 37.24 |
| VIT_08s0007g00510.t01 | Wine grape | cytosol, plastid | 36.73 | 37.09 |
| Bra028391.1-P | Field mustard | nucleus | 31.42 | 36.29 |
| CDY47877 | Canola | nucleus | 31.28 | 36.25 |
| GSMUA_Achr6P34090_001 | Banana | nucleus | 30.87 | 36.11 |
| CDY39530 | Canola | cytosol | 30.73 | 35.54 |
| KRH10240 | Soybean | cytosol | 30.03 | 35.48 |
| AT2G29065.1 | Thale cress | cytosol, nucleus, plastid | 31.15 | 35.4 |
| TraesCS5A01G481300.1 | Wheat | cytosol | 32.26 | 35.27 |
| VIT_06s0004g04970.t01 | Wine grape | cytosol | 32.26 | 35.11 |
| PGSC0003DMT400063769 | Potato | cytosol, nucleus, peroxisome | 31.56 | 34.98 |
| KRH49113 | Soybean | cytosol | 35.75 | 34.88 |
| PGSC0003DMT400016258 | Potato | cytosol | 35.34 | 34.75 |
| CDX79750 | Canola | peroxisome | 32.68 | 34.72 |
| Solyc10g086530.1.1 | Tomato | cytosol | 36.87 | 34.69 |
| KRH29773 | Soybean | cytosol | 29.75 | 34.69 |
| KRH65839 | Soybean | cytosol, plastid | 35.34 | 34.66 |
| Bra000012.1-P | Field mustard | cytosol, nucleus, peroxisome | 32.54 | 34.62 |
| CDY07777 | Canola | cytosol, nucleus, peroxisome | 32.54 | 34.62 |
| KRG99969 | Soybean | cytosol | 35.61 | 34.6 |
| VIT_13s0019g01710.t01 | Wine grape | cytosol | 35.06 | 34.53 |
| VIT_06s0004g04980.t01 | Wine grape | nucleus | 33.8 | 34.38 |
| CDY33040 | Canola | nucleus | 28.63 | 34.34 |
| TraesCS5A01G139000.1 | Wheat | cytosol, plastid | 37.15 | 34.28 |
| KRH24780 | Soybean | cytosol | 31.56 | 34.24 |
| VIT_13s0019g01810.t01 | Wine grape | cytosol | 35.75 | 34.22 |
| Solyc09g010920.1.1 | Tomato | cytosol | 36.31 | 34.17 |
| Solyc01g100200.2.1 | Tomato | nucleus | 31.56 | 33.93 |
| PGSC0003DMT400022997 | Potato | cytosol, plastid | 36.03 | 33.9 |
| CDY06266 | Canola | cytosol | 29.89 | 33.86 |
| Solyc05g053090.1.1 | Tomato | cytosol | 35.06 | 33.78 |
| KRH29774 | Soybean | cytosol | 29.75 | 33.76 |
| PGSC0003DMT400069949 | Potato | cytosol | 35.2 | 33.73 |
| Solyc06g082530.1.1 | Tomato | cytosol | 30.59 | 33.54 |
| Bra033813.1-P | Field mustard | nucleus | 27.23 | 33.51 |
| KRH23095 | Soybean | cytosol | 30.73 | 33.49 |
| AT2G37650.1 | Thale cress | cytosol | 33.52 | 33.43 |
| CDY47878 | Canola | nucleus | 32.12 | 33.29 |
| KRH29775 | Soybean | nucleus | 31.28 | 33.28 |
| VIT_13s0019g01790.t01 | Wine grape | cytosol | 33.38 | 33.24 |
| AT5G59450.1 | Thale cress | nucleus | 28.21 | 33.11 |
| AT3G46600.1 | Thale cress | cytosol | 26.96 | 33.1 |
| PGSC0003DMT400078286 | Potato | nucleus | 30.59 | 32.83 |
| KRH23094 | Soybean | cytosol | 25.28 | 32.73 |
| Bra028390.1-P | Field mustard | cytosol | 32.26 | 32.72 |
| AT2G29060.1 | Thale cress | cytosol | 31.7 | 32.71 |
| CDX86475 | Canola | nucleus | 32.4 | 32.68 |
| KRH24775 | Soybean | cytosol | 31.01 | 32.65 |
| VIT_13s0019g01700.t01 | Wine grape | cytosol | 34.64 | 32.63 |
| KRH24773 | Soybean | nucleus | 31.28 | 32.61 |
| CDX82987 | Canola | nucleus | 27.23 | 32.45 |
| VIT_06s0004g04950.t01 | Wine grape | cytosol | 34.08 | 32.36 |
| TraesCS4A01G177100.1 | Wheat | nucleus | 29.05 | 32.35 |
| GSMUA_AchrUn_... | Banana | cytosol | 29.75 | 32.32 |
| CDX77228 | Canola | cytosol | 30.31 | 32.29 |
| KRH24778 | Soybean | nucleus | 30.31 | 32.1 |
| KRH29771 | Soybean | cytosol | 30.45 | 32.06 |
| TraesCS4A01G176600.1 | Wheat | cytosol | 29.05 | 32.05 |
| Bra031581.1-P | Field mustard | cytosol | 29.89 | 32.04 |
| KRH23091 | Soybean | endoplasmic reticulum, plasma membrane | 33.24 | 32.03 |
| KRH10241 | Soybean | cytosol, nucleus, peroxisome | 30.31 | 31.54 |
| Bra035653.1-P | Field mustard | cytosol | 31.7 | 31.44 |
| KRH29779 | Soybean | cytosol | 32.54 | 31.4 |
| CDY06265 | Canola | cytosol | 30.17 | 31.3 |
| TraesCS5A01G506000.1 | Wheat | cytosol | 26.4 | 31.29 |
| TraesCS3A01G360300.1 | Wheat | cytosol, extracellular, nucleus | 34.5 | 31.27 |
| TraesCS4A01G176300.1 | Wheat | cytosol | 29.47 | 31.26 |
| KRH23089 | Soybean | cytosol | 28.07 | 31.21 |
| CDY15616 | Canola | nucleus | 31.15 | 31.19 |
| Bra031580.1-P | Field mustard | cytosol | 30.03 | 31.16 |
| CDY31749 | Canola | cytosol | 31.56 | 31.13 |
| Bra030688.1-P | Field mustard | nucleus | 32.12 | 30.96 |
| Solyc06g076280.1.1 | Tomato | cytosol | 32.26 | 30.88 |
| TraesCS5A01G080300.1 | Wheat | cytosol | 31.98 | 30.78 |
| TraesCS4A01G176500.1 | Wheat | cytosol | 21.37 | 30.72 |
| KRH10243 | Soybean | nucleus | 28.35 | 30.53 |
| PGSC0003DMT400077972 | Potato | cytosol | 31.98 | 30.45 |
| CDY09912 | Canola | cytosol | 29.75 | 30.43 |
| TraesCS5A01G414000.1 | Wheat | cytosol | 18.02 | 30.28 |
| CDX68388 | Canola | cytosol | 17.46 | 30.19 |
| AT1G07520.3 | Thale cress | cytosol | 29.33 | 30.17 |
| AT1G07530.1 | Thale cress | cytosol | 32.12 | 29.91 |
| KRH23090 | Soybean | vacuole | 25.84 | 29.79 |
| TraesCS5A01G506100.1 | Wheat | cytosol | 26.68 | 29.7 |
| TraesCS4A01G176700.1 | Wheat | cytosol | 27.65 | 29.69 |
| TraesCS7A01G173000.1 | Wheat | cytosol | 30.17 | 28.88 |
| VIT_06s0004g04960.t01 | Wine grape | nucleus | 31.28 | 28.11 |
| CDY09911 | Canola | nucleus | 21.93 | 26.88 |
| TraesCS5A01G409800.1 | Wheat | nucleus, plastid | 18.02 | 25.75 |
| TraesCS4A01G176200.1 | Wheat | peroxisome | 28.49 | 25.44 |
| TraesCS2A01G189600.1 | Wheat | cytosol | 18.72 | 24.19 |
| TraesCS3A01G408000.1 | Wheat | cytosol | 18.3 | 23.73 |
| TraesCS4A01G039000.1 | Wheat | nucleus | 15.22 | 22.29 |
| TraesCS2A01G214400.1 | Wheat | cytosol | 17.18 | 21.58 |
| TraesCS2A01G395400.1 | Wheat | cytosol, mitochondrion, nucleus | 14.39 | 16.32 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G068000.1 | EnsemblPlantsGene:TraesCS3A01G068000 | InterPro:IPR005202 | InterPro:TF_GRAS | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF60 |
| PFAM:PF03514 | PFscan:PS50985 | SEG:seg | MapMan:15.5.12 | : | : |
Description
No Description!
Coordinates
chr3A:+:40871360..40873510
Molecular Weight (calculated)
80883.7 Da
IEP (calculated)
7.132
GRAVY (calculated)
-0.383
Length
716 amino acids
Sequence
(BLAST)
(BLAST)
001: MANTAACGAY CSQEFIESST AKYSDSEFIL HPPAPVSYCP QLSIVSNKVG HVSWSTSSSC KIYSPQLYSA NCDETSAGWR LISVAEHPKT DSDVTLSHIE
101: QMLMQDTDDK VRAPHGETAI RTMEEPFYEL LGQKYPVLPG LLPLCGCDRL NILENGSVSR LNNGQLCNNC SVKISSDNYH SNGSSQASQA PWTLSAIVGE
201: AIQFPLGVEE IGIGLNINGL SISPESHSQH MNDKDTIKHA PFHDRSRKVF PGIEELDLLE GRMNKQIAIF SDEPIRNEAF DKVLLCSEHK PLDEGIILQR
301: TMADISTKYA QNEQGRKPAR QTKRGKTRKK KEVVDLRSLL IHCAEAVSVN NRTIASDILK SIRQHCSPSG DDTQRLAFYL ADCLEIRLSG SGSQINQKVI
401: TTPTNAAHIL KLCHLCFTVC PYLRSSYYLS NKTILDVSKG KPRVHIIDFG IFYGFQWPSL LKQFADREGG PPKLRITGIE LPTPGFRPDE MNKNTRLRLT
501: EYADIFQVPL EYRQISSKWE SISIEELNID KDEVLVVNCI LRMKNVGDET ITIDSARNRV LNTIRMMKPT VFIHGVVNGS YNTPFFLSRF KEVMYHYASM
601: FDMLDKTTPR DNETRMILER DIYKYAILNA IACEGSERIE RPESYKKWNA RSVRARFEQL PLNPTIVKGI QHMVRQIYHK DFFVDEEDQC LVLGWKGRIL
701: YALSTWKPSE SGDEGA
101: QMLMQDTDDK VRAPHGETAI RTMEEPFYEL LGQKYPVLPG LLPLCGCDRL NILENGSVSR LNNGQLCNNC SVKISSDNYH SNGSSQASQA PWTLSAIVGE
201: AIQFPLGVEE IGIGLNINGL SISPESHSQH MNDKDTIKHA PFHDRSRKVF PGIEELDLLE GRMNKQIAIF SDEPIRNEAF DKVLLCSEHK PLDEGIILQR
301: TMADISTKYA QNEQGRKPAR QTKRGKTRKK KEVVDLRSLL IHCAEAVSVN NRTIASDILK SIRQHCSPSG DDTQRLAFYL ADCLEIRLSG SGSQINQKVI
401: TTPTNAAHIL KLCHLCFTVC PYLRSSYYLS NKTILDVSKG KPRVHIIDFG IFYGFQWPSL LKQFADREGG PPKLRITGIE LPTPGFRPDE MNKNTRLRLT
501: EYADIFQVPL EYRQISSKWE SISIEELNID KDEVLVVNCI LRMKNVGDET ITIDSARNRV LNTIRMMKPT VFIHGVVNGS YNTPFFLSRF KEVMYHYASM
601: FDMLDKTTPR DNETRMILER DIYKYAILNA IACEGSERIE RPESYKKWNA RSVRARFEQL PLNPTIVKGI QHMVRQIYHK DFFVDEEDQC LVLGWKGRIL
701: YALSTWKPSE SGDEGA
001: MGSYPDGFPG SMDELDFNKD FDLPPSSNQT LGLANGFYLD DLDFSSLDPP EAYPSQNNNN NNINNKAVAG DLLSSSSDDA DFSDSVLKYI SQVLMEEDME
101: EKPCMFHDAL ALQAAEKSLY EALGEKYPSS SSASSVDHPE RLASDSPDGS CSGGAFSDYA STTTTTSSDS HWSVDGLENR PSWLHTPMPS NFVFQSTSRS
201: NSVTGGGGGG NSAVYGSGFG DDLVSNMFKD DELAMQFKKG VEEASKFLPK SSQLFIDVDS YIPMNSGSKE NGSEVFVKTE KKDETEHHHH HSYAPPPNRL
301: TGKKSHWRDE DEDFVEERSN KQSAVYVEES ELSEMFDKIL VCGPGKPVCI LNQNFPTESA KVVTAQSNGA KIRGKKSTST SHSNDSKKET ADLRTLLVLC
401: AQAVSVDDRR TANEMLRQIR EHSSPLGNGS ERLAHYFANS LEARLAGTGT QIYTALSSKK TSAADMLKAY QTYMSVCPFK KAAIIFANHS MMRFTANANT
501: IHIIDFGISY GFQWPALIHR LSLSRPGGSP KLRITGIELP QRGFRPAEGV QETGHRLARY CQRHNVPFEY NAIAQKWETI QVEDLKLRQG EYVVVNSLFR
601: FRNLLDETVL VNSPRDAVLK LIRKINPNVF IPAILSGNYN APFFVTRFRE ALFHYSAVFD MCDSKLARED EMRLMYEKEF YGREIVNVVA CEGTERVERP
701: ETYKQWQARL IRAGFRQLPL EKELMQNLKL KIENGYDKNF DVDQNGNWLL QGWKGRIVYA SSLWVPSSS
101: EKPCMFHDAL ALQAAEKSLY EALGEKYPSS SSASSVDHPE RLASDSPDGS CSGGAFSDYA STTTTTSSDS HWSVDGLENR PSWLHTPMPS NFVFQSTSRS
201: NSVTGGGGGG NSAVYGSGFG DDLVSNMFKD DELAMQFKKG VEEASKFLPK SSQLFIDVDS YIPMNSGSKE NGSEVFVKTE KKDETEHHHH HSYAPPPNRL
301: TGKKSHWRDE DEDFVEERSN KQSAVYVEES ELSEMFDKIL VCGPGKPVCI LNQNFPTESA KVVTAQSNGA KIRGKKSTST SHSNDSKKET ADLRTLLVLC
401: AQAVSVDDRR TANEMLRQIR EHSSPLGNGS ERLAHYFANS LEARLAGTGT QIYTALSSKK TSAADMLKAY QTYMSVCPFK KAAIIFANHS MMRFTANANT
501: IHIIDFGISY GFQWPALIHR LSLSRPGGSP KLRITGIELP QRGFRPAEGV QETGHRLARY CQRHNVPFEY NAIAQKWETI QVEDLKLRQG EYVVVNSLFR
601: FRNLLDETVL VNSPRDAVLK LIRKINPNVF IPAILSGNYN APFFVTRFRE ALFHYSAVFD MCDSKLARED EMRLMYEKEF YGREIVNVVA CEGTERVERP
701: ETYKQWQARL IRAGFRQLPL EKELMQNLKL KIENGYDKNF DVDQNGNWLL QGWKGRIVYA SSLWVPSSS
Arabidopsis Description
SCL14SCL14 [Source:UniProtKB/TrEMBL;Acc:A0A178WH17]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.