Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G336200.1 | Wheat | cytosol | 85.76 | 88.7 |
| TraesCS4D01G332000.1 | Wheat | cytosol | 95.86 | 85.78 |
| TraesCS5A01G506100.1 | Wheat | cytosol | 86.09 | 80.87 |
| TraesCS4A01G176700.1 | Wheat | cytosol | 81.13 | 73.46 |
| TraesCS4A01G177100.1 | Wheat | nucleus | 63.24 | 59.41 |
| TraesCS4A01G176400.1 | Wheat | cytosol | 43.21 | 52.41 |
| TraesCS5A01G505900.1 | Wheat | cytosol | 33.77 | 50.37 |
| Zm00001d003553_P001 | Maize | cytosol | 48.68 | 48.43 |
| OQU84120 | Sorghum | nucleus | 50.83 | 48.42 |
| KXG26392 | Sorghum | cytosol | 50.66 | 48.27 |
| Zm00001d048600_P001 | Maize | nucleus | 49.17 | 46.05 |
| KXG29232 | Sorghum | cytosol | 51.32 | 45.59 |
| TraesCS4A01G176600.1 | Wheat | cytosol | 45.7 | 42.53 |
| TraesCS4A01G176300.1 | Wheat | cytosol | 47.52 | 42.52 |
| TraesCS7A01G173000.1 | Wheat | cytosol | 49.5 | 39.97 |
| TraesCS4A01G176500.1 | Wheat | cytosol | 32.45 | 39.36 |
| GSMUA_Achr5P08320_001 | Banana | cytosol | 29.14 | 39.2 |
| TraesCS5A01G080300.1 | Wheat | cytosol | 47.35 | 38.44 |
| TraesCS4A01G176200.1 | Wheat | peroxisome | 49.01 | 36.91 |
| TraesCS5A01G481300.1 | Wheat | cytosol | 36.09 | 33.28 |
| TraesCS5A01G139000.1 | Wheat | cytosol, plastid | 40.4 | 31.44 |
| TraesCS3A01G360300.1 | Wheat | cytosol, extracellular, nucleus | 39.74 | 30.38 |
| TraesCS5A01G414000.1 | Wheat | cytosol | 20.86 | 29.58 |
| TraesCS1A01G030200.1 | Wheat | cytosol | 32.45 | 27.18 |
| TraesCS3A01G067900.1 | Wheat | cytosol | 32.12 | 26.87 |
| TraesCS1A01G030300.1 | Wheat | cytosol | 31.29 | 26.77 |
| TraesCS5A01G409800.1 | Wheat | nucleus, plastid | 22.02 | 26.55 |
| TraesCS3A01G068000.1 | Wheat | nucleus | 31.29 | 26.4 |
| TraesCS2A01G189600.1 | Wheat | cytosol | 22.19 | 24.19 |
| TraesCS4A01G039000.1 | Wheat | nucleus | 18.05 | 22.29 |
| TraesCS2A01G214400.1 | Wheat | cytosol | 20.03 | 21.23 |
| TraesCS3A01G408000.1 | Wheat | cytosol | 19.37 | 21.2 |
| TraesCS2A01G395400.1 | Wheat | cytosol, mitochondrion, nucleus | 17.72 | 16.96 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G506000.1 | EnsemblPlantsGene:TraesCS5A01G506000 | InterPro:IPR005202 | InterPro:TF_GRAS | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF27 |
| PFAM:PF03514 | PFscan:PS50985 | SEG:seg | MapMan:15.5.12 | : | : |
Description
No Description!
Coordinates
chr5A:+:671177624..671180109
Molecular Weight (calculated)
67786.2 Da
IEP (calculated)
6.563
GRAVY (calculated)
-0.275
Length
604 amino acids
Sequence
(BLAST)
(BLAST)
001: MLTEEDIVDK FFYQYPDHPK LLQAEQPFAE ILADTSSSAA QESFASSTSI LMASQGNNTD FMVSGCQVQD PVFFLNGTGT GTVEPNSMVF PSESSTSMIM
101: LSSMEFFKGM EEANMFLPTD DVMVDGRGRK KRSGMDGEAE AGLGRSSKQI VVLLHSTTTL EEEEATALEM LDRLILNGYE ACPSEMQEVV RVTWEDKEDK
201: AARQSISRRG RRGARHTVVT DLETLLTRCA EAVVSNDVRG AGKLLERIKC HSSPTGDARQ RLAHYFTQGL EARLAGTGSR LYRSLMGKRT SVLELIRAFH
301: LHTAVSCSIK VGLLFSTNTI YKAVAGRRKL HIVHYGMTTG FQWPDLLRLL ANREGGPPEV RITGINTPLP GPCPDALMQE AGHRLDNCAS QFGVPFKFHA
401: IASKPEDVRA EDLHIDPDEV LVVSSLYEFR TLMDESLTFD MVSPRDMVLK TIRKMRPSVF ISSVVNGPYG AAFFMTRFRH ALYYFTALFD VMETTVPWDG
501: DKRLLVERDI LARSAINMIA CEGTDRVERP QNYKEWQARN QRAGLRQLPL DPDIVLMLRD EVKNRYHKHF MISEDHRWLL QGWKGRVLYA HSTWAAADAT
601: GSLV
101: LSSMEFFKGM EEANMFLPTD DVMVDGRGRK KRSGMDGEAE AGLGRSSKQI VVLLHSTTTL EEEEATALEM LDRLILNGYE ACPSEMQEVV RVTWEDKEDK
201: AARQSISRRG RRGARHTVVT DLETLLTRCA EAVVSNDVRG AGKLLERIKC HSSPTGDARQ RLAHYFTQGL EARLAGTGSR LYRSLMGKRT SVLELIRAFH
301: LHTAVSCSIK VGLLFSTNTI YKAVAGRRKL HIVHYGMTTG FQWPDLLRLL ANREGGPPEV RITGINTPLP GPCPDALMQE AGHRLDNCAS QFGVPFKFHA
401: IASKPEDVRA EDLHIDPDEV LVVSSLYEFR TLMDESLTFD MVSPRDMVLK TIRKMRPSVF ISSVVNGPYG AAFFMTRFRH ALYYFTALFD VMETTVPWDG
501: DKRLLVERDI LARSAINMIA CEGTDRVERP QNYKEWQARN QRAGLRQLPL DPDIVLMLRD EVKNRYHKHF MISEDHRWLL QGWKGRVLYA HSTWAAADAT
601: GSLV
001: MGSYPDGFPG SMDELDFNKD FDLPPSSNQT LGLANGFYLD DLDFSSLDPP EAYPSQNNNN NNINNKAVAG DLLSSSSDDA DFSDSVLKYI SQVLMEEDME
101: EKPCMFHDAL ALQAAEKSLY EALGEKYPSS SSASSVDHPE RLASDSPDGS CSGGAFSDYA STTTTTSSDS HWSVDGLENR PSWLHTPMPS NFVFQSTSRS
201: NSVTGGGGGG NSAVYGSGFG DDLVSNMFKD DELAMQFKKG VEEASKFLPK SSQLFIDVDS YIPMNSGSKE NGSEVFVKTE KKDETEHHHH HSYAPPPNRL
301: TGKKSHWRDE DEDFVEERSN KQSAVYVEES ELSEMFDKIL VCGPGKPVCI LNQNFPTESA KVVTAQSNGA KIRGKKSTST SHSNDSKKET ADLRTLLVLC
401: AQAVSVDDRR TANEMLRQIR EHSSPLGNGS ERLAHYFANS LEARLAGTGT QIYTALSSKK TSAADMLKAY QTYMSVCPFK KAAIIFANHS MMRFTANANT
501: IHIIDFGISY GFQWPALIHR LSLSRPGGSP KLRITGIELP QRGFRPAEGV QETGHRLARY CQRHNVPFEY NAIAQKWETI QVEDLKLRQG EYVVVNSLFR
601: FRNLLDETVL VNSPRDAVLK LIRKINPNVF IPAILSGNYN APFFVTRFRE ALFHYSAVFD MCDSKLARED EMRLMYEKEF YGREIVNVVA CEGTERVERP
701: ETYKQWQARL IRAGFRQLPL EKELMQNLKL KIENGYDKNF DVDQNGNWLL QGWKGRIVYA SSLWVPSSS
101: EKPCMFHDAL ALQAAEKSLY EALGEKYPSS SSASSVDHPE RLASDSPDGS CSGGAFSDYA STTTTTSSDS HWSVDGLENR PSWLHTPMPS NFVFQSTSRS
201: NSVTGGGGGG NSAVYGSGFG DDLVSNMFKD DELAMQFKKG VEEASKFLPK SSQLFIDVDS YIPMNSGSKE NGSEVFVKTE KKDETEHHHH HSYAPPPNRL
301: TGKKSHWRDE DEDFVEERSN KQSAVYVEES ELSEMFDKIL VCGPGKPVCI LNQNFPTESA KVVTAQSNGA KIRGKKSTST SHSNDSKKET ADLRTLLVLC
401: AQAVSVDDRR TANEMLRQIR EHSSPLGNGS ERLAHYFANS LEARLAGTGT QIYTALSSKK TSAADMLKAY QTYMSVCPFK KAAIIFANHS MMRFTANANT
501: IHIIDFGISY GFQWPALIHR LSLSRPGGSP KLRITGIELP QRGFRPAEGV QETGHRLARY CQRHNVPFEY NAIAQKWETI QVEDLKLRQG EYVVVNSLFR
601: FRNLLDETVL VNSPRDAVLK LIRKINPNVF IPAILSGNYN APFFVTRFRE ALFHYSAVFD MCDSKLARED EMRLMYEKEF YGREIVNVVA CEGTERVERP
701: ETYKQWQARL IRAGFRQLPL EKELMQNLKL KIENGYDKNF DVDQNGNWLL QGWKGRIVYA SSLWVPSSS
Arabidopsis Description
SCL14SCL14 [Source:UniProtKB/TrEMBL;Acc:A0A178WH17]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.