Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g086530.1.1 | Tomato | cytosol | 95.63 | 83.44 |
| PGSC0003DMT400022997 | Potato | cytosol, plastid | 76.36 | 66.62 |
| GSMUA_Achr10P... | Banana | nucleus | 39.01 | 58.6 |
| VIT_08s0007g00510.t01 | Wine grape | cytosol, plastid | 61.9 | 57.97 |
| KRG99969 | Soybean | cytosol | 59.49 | 53.6 |
| KRH49113 | Soybean | cytosol | 58.89 | 53.27 |
| KRH65839 | Soybean | cytosol, plastid | 58.43 | 53.15 |
| GSMUA_Achr8P02550_001 | Banana | nucleus | 30.27 | 51.28 |
| CDX79750 | Canola | peroxisome | 51.96 | 51.19 |
| Bra000012.1-P | Field mustard | cytosol, nucleus, peroxisome | 51.81 | 51.11 |
| GSMUA_Achr10P... | Banana | cytosol | 46.08 | 51.09 |
| CDY07777 | Canola | cytosol, nucleus, peroxisome | 51.51 | 50.82 |
| PGSC0003DMT400016258 | Potato | cytosol | 55.57 | 50.69 |
| AT2G37650.1 | Thale cress | cytosol | 54.07 | 50.0 |
| PGSC0003DMT400005480 | Potato | cytosol | 35.24 | 48.05 |
| GSMUA_Achr6P34090_001 | Banana | nucleus | 44.28 | 48.04 |
| TraesCS1B01G037500.1 | Wheat | cytosol | 29.82 | 47.94 |
| Zm00001d028603_P001 | Maize | cytosol | 52.71 | 47.68 |
| OQU92829 | Sorghum | cytosol | 52.56 | 47.55 |
| GSMUA_Achr7P15080_001 | Banana | cytosol | 42.77 | 47.49 |
| HORVU3Hr1G012520.1 | Barley | cytosol | 32.38 | 47.15 |
| Zm00001d034664_P001 | Maize | plastid | 39.61 | 47.05 |
| Os03t0690600-03 | Rice | cytosol | 51.66 | 46.92 |
| PGSC0003DMT400069949 | Potato | cytosol | 52.56 | 46.72 |
| Os04t0590400-01 | Rice | cytosol, nucleus, peroxisome | 42.02 | 43.87 |
| KXG38103 | Sorghum | cytosol | 40.81 | 43.29 |
| KXG37250 | Sorghum | cytosol | 42.17 | 43.01 |
| TraesCS5A01G139000.1 | Wheat | cytosol, plastid | 50.0 | 42.78 |
| TraesCS5D01G152700.1 | Wheat | cytosol, plastid | 49.85 | 42.76 |
| KXG21079 | Sorghum | cytosol | 40.06 | 42.7 |
| TraesCS5B01G138100.1 | Wheat | cytosol, plastid | 49.85 | 42.65 |
| HORVU5Hr1G045020.29 | Barley | cytosol | 50.45 | 42.57 |
| HORVU5Hr1G113620.1 | Barley | cytosol, nucleus, peroxisome | 41.27 | 42.55 |
| KXG21080 | Sorghum | cytosol | 40.06 | 42.49 |
| TraesCS5A01G481300.1 | Wheat | cytosol | 41.87 | 42.44 |
| Zm00001d011070_P001 | Maize | cytosol | 40.06 | 42.42 |
| Zm00001d035671_P001 | Maize | cytosol | 39.91 | 42.33 |
| TraesCS5D01G494900.1 | Wheat | cytosol | 41.87 | 42.31 |
| TraesCS5B01G494500.1 | Wheat | cytosol | 41.87 | 42.31 |
| HORVU3Hr1G012550.6 | Barley | cytosol | 37.65 | 41.95 |
| PGSC0003DMT400077972 | Potato | cytosol | 47.29 | 41.76 |
| PGSC0003DMT400063769 | Potato | cytosol, nucleus, peroxisome | 40.51 | 41.64 |
| Zm00001d047813_P002 | Maize | nucleus | 51.66 | 41.38 |
| PGSC0003DMT400078286 | Potato | nucleus | 41.11 | 40.93 |
| GSMUA_AchrUn_... | Banana | cytosol | 40.36 | 40.67 |
| OQU91407 | Sorghum | nucleus | 38.86 | 37.61 |
| TraesCS3D01G067900.1 | Wheat | nucleus | 38.86 | 37.39 |
| TraesCS1B01G037300.1 | Wheat | cytosol | 39.16 | 36.93 |
| HORVU1Hr1G004440.1 | Barley | cytosol | 39.16 | 36.16 |
| TraesCS1D01G030900.1 | Wheat | cytosol | 38.55 | 35.9 |
| TraesCS3B01G081100.1 | Wheat | nucleus | 38.55 | 35.8 |
| EES18882 | Sorghum | cytosol | 39.46 | 35.74 |
| TraesCS1D01G030800.1 | Wheat | cytosol | 37.65 | 35.66 |
| TraesCS3D01G067800.1 | Wheat | nucleus | 36.3 | 35.65 |
| TraesCS3A01G068000.1 | Wheat | nucleus | 38.4 | 35.61 |
| TraesCS1D01G031000.1 | Wheat | cytosol | 38.86 | 35.59 |
| Zm00001d035670_P001 | Maize | cytosol | 38.86 | 35.54 |
| TraesCS1A01G030300.1 | Wheat | cytosol | 37.65 | 35.41 |
| EER91260 | Sorghum | nucleus | 38.25 | 35.23 |
| TraesCS1B01G037400.1 | Wheat | cytosol | 38.25 | 35.13 |
| TraesCS3D01G067700.1 | Wheat | cytosol | 38.1 | 35.04 |
| TraesCS1D01G031200.1 | Wheat | cytosol | 38.4 | 34.98 |
| TraesCS3B01G080900.1 | Wheat | nucleus | 37.95 | 34.95 |
| OQU91406 | Sorghum | nucleus | 39.16 | 34.76 |
| TraesCS3B01G081000.1 | Wheat | cytosol | 38.1 | 34.75 |
| KXG38064 | Sorghum | nucleus | 37.65 | 34.72 |
| Zm00001d033166_P001 | Maize | nucleus | 38.25 | 34.7 |
| TraesCS1A01G030200.1 | Wheat | cytosol | 37.35 | 34.4 |
| TraesCS3A01G067900.1 | Wheat | cytosol | 37.35 | 34.35 |
| EES18880 | Sorghum | cytosol | 37.8 | 33.87 |
| TraesCS1B01G037200.1 | Wheat | nucleus | 37.35 | 32.76 |
| PGSC0003DMT400015696 | Potato | cytosol | 21.39 | 26.54 |
| PGSC0003DMT400060553 | Potato | cytosol | 20.63 | 26.14 |
| PGSC0003DMT400057111 | Potato | nucleus | 21.08 | 26.07 |
| PGSC0003DMT400034763 | Potato | cytosol | 20.63 | 25.66 |
| PGSC0003DMT400021748 | Potato | nucleus | 19.88 | 23.61 |
| PGSC0003DMT400056120 | Potato | cytosol | 19.58 | 23.26 |
| PGSC0003DMT400049492 | Potato | cytosol | 19.73 | 22.51 |
| PGSC0003DMT400063944 | Potato | cytosol, mitochondrion | 17.02 | 20.21 |
| PGSC0003DMT400076932 | Potato | nucleus | 14.76 | 16.17 |
| PGSC0003DMT400026240 | Potato | nucleus, plastid | 15.81 | 16.05 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400049420 | EnsemblPlantsGene:PGSC0003DMG400019200 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR005202 | InterPro:TF_GRAS | PANTHER:PTHR31636 |
| PANTHER:PTHR31636:SF44 | PFAM:PF03514 | PFscan:PS50985 | PGSC:PGSC0003DMG400019200 | SEG:seg | UniParc:UPI000295833D |
| UniProt:M1BNP9 | MapMan:15.5.12 | : | : | : | : |
Description
GRAS family transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400019200]
Coordinates
chr10:-:51169422..51171416
Molecular Weight (calculated)
75622.6 Da
IEP (calculated)
6.795
GRAVY (calculated)
-0.510
Length
664 amino acids
Sequence
(BLAST)
(BLAST)
001: MLMEEDMEDK THMLQESLEL QAKERSFYEA LGKKYPPSPQ QNLPITDQNG EIPDDYYSGS VYSSTSNVID SSGYLIDPRL VSISNDHNYS YEQGLFICNG
101: AYSSISSSNS INNLVDGFLD SPVSPLHIPD IYNDSHPIWN FRKGVEEARK FLPTNNKLLD NVVINDLLPQ EKRGESGCAA AQVEKRDVGA TSPTGPRGTK
201: NPHRDDRDLL EEEEERSSKQ AAVYTESTVR SDEFDVILLH SMGDGREALT AYRESLKNAR TKPTVQSKGF AVGRGGRGKK QSGKKEVIDL RSLLINCAQA
301: VAADDCRSAT ELLKQVRLHS SPFGDGNQRL AHCFADGLEA RLAGTGSQIY KALVNKRTSA ADFLKAYHLY LASCPFRKMS GFTSNKTIIR KSKNATRVHV
401: IDFGILYGFQ WPTLIQRIAA REGGPPNLRI TGIEFPQPGF RPAERIEETG RRLSDYAKSF NVPFEYQAIA KKWETIRLED LKLEKDEYLV VNCLYRFKNL
501: HDETVLSDSS RTLVLNLIRE INPDIFIHGI VNGAYSAPFF VTRFREVLFH FSALFDMLEA NVPREFPERM LIEREIFGRE ALNVIACEGW ERVERPETYK
601: QWQVRHLRAR FTQTPFEQEE IMNMAVEKVR TSYHKDFVID QDNKWMLLGW KGRTIYALSC WTPI
101: AYSSISSSNS INNLVDGFLD SPVSPLHIPD IYNDSHPIWN FRKGVEEARK FLPTNNKLLD NVVINDLLPQ EKRGESGCAA AQVEKRDVGA TSPTGPRGTK
201: NPHRDDRDLL EEEEERSSKQ AAVYTESTVR SDEFDVILLH SMGDGREALT AYRESLKNAR TKPTVQSKGF AVGRGGRGKK QSGKKEVIDL RSLLINCAQA
301: VAADDCRSAT ELLKQVRLHS SPFGDGNQRL AHCFADGLEA RLAGTGSQIY KALVNKRTSA ADFLKAYHLY LASCPFRKMS GFTSNKTIIR KSKNATRVHV
401: IDFGILYGFQ WPTLIQRIAA REGGPPNLRI TGIEFPQPGF RPAERIEETG RRLSDYAKSF NVPFEYQAIA KKWETIRLED LKLEKDEYLV VNCLYRFKNL
501: HDETVLSDSS RTLVLNLIRE INPDIFIHGI VNGAYSAPFF VTRFREVLFH FSALFDMLEA NVPREFPERM LIEREIFGRE ALNVIACEGW ERVERPETYK
601: QWQVRHLRAR FTQTPFEQEE IMNMAVEKVR TSYHKDFVID QDNKWMLLGW KGRTIYALSC WTPI
001: MITEPSLTGI SGMVNRNRLS GLPDQPSSHS FTPVTLYDGF NYNLSSDHIN TVVAAPENSV FIREEEEEED PADDFDFSDA VLGYISQMLN EEDMDDKVCM
101: LQESLDLEAA ERSLYEAIGK KYPPSPERNL AFAERNSENL DRVVPGNYTG GDCIGFGNGG IKPLSSGFTL DFRNPQSCSS ILSVPQSNGL ITIYGDGIDE
201: SSKNNRENHQ SVWLFRREIE EANRFNPEEN ELIVNFREEN CVSKARKNSS RDEICVEEER SSKLPAVFGE DILRSDVVDK ILVHVPGGES MKEFNALRDV
301: LKKGVEKKKA SDAQGGKRRA RGRGRGRGRG GGGGQNGKKE VVDLRSLLIH CAQAVAADDR RCAGQLLKQI RLHSTPFGDG NQRLAHCFAN GLEARLAGTG
401: SQIYKGIVSK PRSAAAVLKA HQLFLACCPF RKLSYFITNK TIRDLVGNSQ RVHVIDFGIL YGFQWPTLIH RFSMYGSPKV RITGIEFPQP GFRPAQRVEE
501: TGQRLAAYAK LFGVPFEYKA IAKKWDAIQL EDLDIDRDEI TVVNCLYRAE NLHDESVKVE SCRDTVLNLI GKINPDLFVF GIVNGAYNAP FFVTRFREAL
601: FHFSSIFDML ETIVPREDEE RMFLEMEVFG REALNVIACE GWERVERPET YKQWHVRAMR SGLVQVPFDP SIMKTSLHKV HTFYHKDFVI DQDNRWLLQG
701: WKGRTVMALS VWKPESKA
101: LQESLDLEAA ERSLYEAIGK KYPPSPERNL AFAERNSENL DRVVPGNYTG GDCIGFGNGG IKPLSSGFTL DFRNPQSCSS ILSVPQSNGL ITIYGDGIDE
201: SSKNNRENHQ SVWLFRREIE EANRFNPEEN ELIVNFREEN CVSKARKNSS RDEICVEEER SSKLPAVFGE DILRSDVVDK ILVHVPGGES MKEFNALRDV
301: LKKGVEKKKA SDAQGGKRRA RGRGRGRGRG GGGGQNGKKE VVDLRSLLIH CAQAVAADDR RCAGQLLKQI RLHSTPFGDG NQRLAHCFAN GLEARLAGTG
401: SQIYKGIVSK PRSAAAVLKA HQLFLACCPF RKLSYFITNK TIRDLVGNSQ RVHVIDFGIL YGFQWPTLIH RFSMYGSPKV RITGIEFPQP GFRPAQRVEE
501: TGQRLAAYAK LFGVPFEYKA IAKKWDAIQL EDLDIDRDEI TVVNCLYRAE NLHDESVKVE SCRDTVLNLI GKINPDLFVF GIVNGAYNAP FFVTRFREAL
601: FHFSSIFDML ETIVPREDEE RMFLEMEVFG REALNVIACE GWERVERPET YKQWHVRAMR SGLVQVPFDP SIMKTSLHKV HTFYHKDFVI DQDNRWLLQG
701: WKGRTVMALS VWKPESKA
Arabidopsis Description
SCL9Scarecrow-like protein 9 [Source:UniProtKB/Swiss-Prot;Acc:O80933]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.