Factsheet for PGSC0003DMT400063944

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 1
mitochondrion 4
cytosol 2
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g064550.1.1	Tomato	mitochondrion	96.96	96.27
GSMUA_Achr6P11780_001	Banana	cytosol	44.36	72.51
Bra017915.1-P	Field mustard	cytoskeleton, cytosol, nucleus, plastid	49.37	67.65
VIT_18s0001g15270.t01	Wine grape	cytosol, plastid	63.33	62.65
KRH18097	Soybean	cytosol	61.36	58.04
KRH15917	Soybean	cytosol	61.0	57.7
GSMUA_Achr10P...	Banana	cytosol	56.17	56.88
CDY61060	Canola	cytosol	54.56	56.59
CDY00377	Canola	cytosol	55.64	56.55
CDY68224	Canola	cytosol	57.78	56.08
Bra012280.1-P	Field mustard	cytosol	54.92	55.92
KRH53364	Soybean	cytosol	59.93	55.83
CDY50240	Canola	cytosol	57.07	55.38
KRH64568	Soybean	cytosol	59.03	55.37
AT1G21450.1	Thale cress	nucleus	57.78	54.47
GSMUA_Achr3P02410_001	Banana	nucleus	55.64	52.98
Os01t0881500-01	Rice	cytosol	51.88	52.44
TraesCS3D01G403100.1	Wheat	cytosol	50.98	51.63
TraesCS3B01G441600.1	Wheat	cytosol	50.98	51.63
HORVU3Hr1G091250.1	Barley	cytosol	50.8	51.45
TraesCS3A01G408000.1	Wheat	cytosol	50.8	51.45
KXG33821	Sorghum	cytosol	50.98	50.09
EES18257	Sorghum	cytosol	48.84	48.49
Zm00001d038225_P001	Maize	cytosol	47.59	47.42
PGSC0003DMT400015696	Potato	cytosol	41.14	42.99
PGSC0003DMT400034763	Potato	cytosol	37.75	39.51
PGSC0003DMT400057111	Potato	nucleus	37.75	39.29
PGSC0003DMT400060553	Potato	cytosol	35.78	38.17
PGSC0003DMT400021748	Potato	nucleus	37.92	37.92
PGSC0003DMT400056120	Potato	cytosol	36.49	36.49
PGSC0003DMT400049492	Potato	cytosol	37.21	35.74
PGSC0003DMT400076932	Potato	nucleus	32.02	29.54
PGSC0003DMT400026240	Potato	nucleus, plastid	33.99	29.05
PGSC0003DMT400005480	Potato	cytosol	21.29	24.44
PGSC0003DMT400063769	Potato	cytosol, nucleus, peroxisome	21.11	18.27
PGSC0003DMT400016258	Potato	cytosol	22.54	17.31
PGSC0003DMT400069949	Potato	cytosol	23.08	17.27
PGSC0003DMT400078286	Potato	nucleus	20.39	17.09
PGSC0003DMT400049420	Potato	cytosol	20.21	17.02
PGSC0003DMT400077972	Potato	cytosol	22.72	16.89
PGSC0003DMT400022997	Potato	cytosol, plastid	21.47	15.77

Protein Annotations

EntrezGene:102601859	MapMan:15.5.12	ncoils:Coil	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	UniProt:M1CBH6
PFAM:PF03514	EnsemblPlantsGene:PGSC0003DMG400024853	PGSC:PGSC0003DMG400024853	EnsemblPlants:PGSC0003DMT400063944	PFscan:PS50985	PANTHER:PTHR31636
PANTHER:PTHR31636:SF10	InterPro:Scarecrow-like_1	InterPro:TF_GRAS	UniParc:UPI000295A163	RefSeq:XP_006356310.1	RefSeq:XP_006356311.1
RefSeq:XP_006356312.1	RefSeq:XP_006356313.1	SEG:seg	:	:	:

Description

GRAS6 [Source:PGSC_GENE;Acc:PGSC0003DMG400024853]

Coordinates

chr4:+:58005643..58009348

Molecular Weight (calculated)

62803.9 Da

IEP (calculated)

4.741

GRAVY (calculated)

-0.406

Length

559 amino acids

Sequence
(BLAST)

001: MSLVRSLRSI GNGKLYFQNG HDDNSSLSTS MYSKNARGIM YATESSSTDS YDPKYLLESP SPSEELLTTS PTDVLGNPFH QRHSSSFHPS RDYNQASYDS
101: GDFVNQSPDS SEYNDGRVTM KLQELERVLF DDNEIEGDDV FTRGETMDID DEWFNQIRTE LLQESTSADS NISSSSSYKE ISVSAPQTPK QMLFSCAAAI
201: QDGHIEQASS MINELRQMVS IQGDPLERTA AYMVEALAAR MATSGRGLYK ALKCKEATSS ERLSAMQVLF EVCPYFRFGF MAANGAILEA FKDEKRVHII
301: DFDLNQGSQY YTLLQTLASM PGKPPHVRLT GVDDPESVQR AIGGLNVIGL RLAELAKDLK ISFEFQAVSS NTGLVTPAML NCRPGEAVLV NFAFQLHHMP
401: DESVSTVNQR DQLLRMVKSL NPKLVTVVEQ DMNTNTAPFL QRFAEVYNYY CVVFESLDAT LSRDSQERVN VERQCLARDI INIVACEGLE RIERYEVAGK
501: WRARMMMAGF TPSPISRNVY DSIRNLIKQY SERYKAEEEA GALYFGWEDK TLTVASAWR

Best Arabidopsis Sequence Match ( AT1G21450.1 )
(BLAST)

001: MVEQTVVREH IKARVMSLVR SAEPSSYRNP KLYTLNENGN NNGVSSAQIF DPDRSKNPCL TDDSYPSQSY EKYFLDSPTD EFVQHPIGSG ASVSSFGSLD
101: SFPYQSRPVL GCSMEFQLPL DSTSTSSTRL LGDYQAVSYS PSMDVVEEFD DEQMRSKIQE LERALLGDED DKMVGIDNLM EIDSEWSYQN ESEQHQDSPK
201: ESSSADSNSH VSSKEVVSQA TPKQILISCA RALSEGKLEE ALSMVNELRQ IVSIQGDPSQ RIAAYMVEGL AARMAASGKF IYRALKCKEP PSDERLAAMQ
301: VLFEVCPCFK FGFLAANGAI LEAIKGEEEV HIIDFDINQG NQYMTLIRSI AELPGKRPRL RLTGIDDPES VQRSIGGLRI IGLRLEQLAE DNGVSFKFKA
401: MPSKTSIVSP STLGCKPGET LIVNFAFQLH HMPDESVTTV NQRDELLHMV KSLNPKLVTV VEQDVNTNTS PFFPRFIEAY EYYSAVFESL DMTLPRESQE
501: RMNVERQCLA RDIVNIVACE GEERIERYEA AGKWRARMMM AGFNPKPMSA KVTNNIQNLI KQQYCNKYKL KEEMGELHFC WEEKSLIVAS AWR

Arabidopsis Description

SCL1Scarecrow-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SDQ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.