Factsheet for PGSC0003DMT400060553

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g014830.1.1	Tomato	mitochondrion	95.23	90.24
PGSC0003DMT400034763	Potato	cytosol	75.95	74.53
PGSC0003DMT400021748	Potato	nucleus	69.08	64.76
VIT_00s0463g00020.t01	Wine grape	nucleus	64.12	61.65
GSMUA_Achr4P07010_001	Banana	cytosol	36.83	58.84
KRH01979	Soybean	cytosol	60.11	57.8
KRH51175	Soybean	cytosol	59.16	57.2
TraesCS5A01G414000.1	Wheat	cytosol	45.99	56.57
KRH36572	Soybean	cytosol	58.4	55.84
KRH11548	Soybean	nucleus	58.78	55.8
AT4G17230.1	Thale cress	cytosol	55.53	55.01
CDY35589	Canola	cytosol	54.2	53.48
CDY50128	Canola	cytosol, plastid	54.39	53.47
Bra021063.1-P	Field mustard	plastid	53.82	53.21
CDY58168	Canola	plastid	53.82	53.21
CDY42968	Canola	cytosol	54.01	52.9
PGSC0003DMT400015696	Potato	cytosol	54.01	52.9
Bra026237.1-P	Field mustard	plastid	53.82	52.71
TraesCS5A01G409800.1	Wheat	nucleus, plastid	50.0	52.3
GSMUA_Achr4P11050_001	Banana	nucleus	39.31	51.89
Os03t0193000-01	Rice	plastid	51.72	50.65
Zm00001d048199_P001	Maize	mitochondrion, nucleus	51.53	50.37
EER95348	Sorghum	cytosol	51.53	50.37
TraesCS2B01G217500.1	Wheat	cytosol	52.67	49.82
Os07t0583600-01	Rice	plasma membrane	51.53	49.63
GSMUA_AchrUn_...	Banana	nucleus	40.46	49.53
TraesCS2A01G189600.1	Wheat	cytosol	51.91	49.1
HORVU2Hr1G036280.1	Barley	cytosol	52.1	49.01
TraesCS2D01G198200.1	Wheat	cytosol	51.91	49.01
HORVU4Hr1G071670.1	Barley	cytosol	50.0	48.88
PGSC0003DMT400057111	Potato	nucleus	50.0	48.79
TraesCS5D01G419400.2	Wheat	cytosol	51.15	48.73
TraesCS4B01G266700.1	Wheat	cytosol	49.81	48.6
TraesCS4D01G266400.1	Wheat	cytosol	49.62	48.51
TraesCS4A01G039000.1	Wheat	nucleus	45.04	48.26
EER97449	Sorghum	cytosol	50.19	48.08
Zm00001d030500_P001	Maize	nucleus	49.62	47.97
Zm00001d006701_P001	Maize	cytosol	50.38	47.65
Zm00001d021946_P001	Maize	cytosol	49.81	46.77
HORVU5Hr1G099160.1	Barley	plastid	50.19	41.75
PGSC0003DMT400056120	Potato	cytosol	43.13	40.43
PGSC0003DMT400049492	Potato	cytosol	43.51	39.18
PGSC0003DMT400063944	Potato	cytosol, mitochondrion	38.17	35.78
PGSC0003DMT400005480	Potato	cytosol	24.43	26.28
PGSC0003DMT400076932	Potato	nucleus	29.77	25.74
PGSC0003DMT400026240	Potato	nucleus, plastid	29.2	23.39
PGSC0003DMT400063769	Potato	cytosol, nucleus, peroxisome	25.95	21.05
PGSC0003DMT400049420	Potato	cytosol	26.14	20.63
PGSC0003DMT400016258	Potato	cytosol	28.24	20.33
PGSC0003DMT400078286	Potato	nucleus	25.38	19.94
PGSC0003DMT400069949	Potato	cytosol	28.24	19.81
PGSC0003DMT400077972	Potato	cytosol	28.24	19.68
PGSC0003DMT400022997	Potato	cytosol, plastid	26.91	18.53

Protein Annotations

EnsemblPlants:PGSC0003DMT400060553	EnsemblPlantsGene:PGSC0003DMG400023556	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:Scarecrow-like_13	InterPro:TF_GRAS
PANTHER:PTHR31636	PANTHER:PTHR31636:SF45	PFAM:PF03514	PFscan:PS50985	PGSC:PGSC0003DMG400023556	SEG:seg
UniParc:UPI000295C7B9	UniProt:M1C631	MapMan:15.5.12	:	:	:

Description

GRAS1 [Source:PGSC_GENE;Acc:PGSC0003DMG400023556]

Coordinates

chr4:-:8824687..8827215

Molecular Weight (calculated)

58685.7 Da

IEP (calculated)

6.863

GRAVY (calculated)

-0.366

Length

524 amino acids

Sequence
(BLAST)

001: MQQVQQYYTP CHASDNSSYN DGSNSGTEVS LKTQNEKFFT MDSFPATDCA IYDADPSISV SSNRSPFSPQ CSQSNMFEKR RSSENTSGSP VSLCSGVDDS
101: NGKKHELWEL NNKLLRPESD IDDSCSCSLN GVVSKHFSLT RRNQVLDVAS RLDLKELLVA CAEAVDEADT STAEVLMDAL EKRVSVSGEP MQRLSAYMLE
201: GLRARLLSSG SNIYKKLKCN EPTSSELLSY MQVLYNITPY FKFAYMSANV VISEAMKNEN RIHIIDFQIA QGSQWMFLIH YLARRPGGPP FLRITGVDDS
301: QSAHARGGGL QLVGERLASI AKSCGVPFEF HNAALSGCMV KLENLRVRHG ESLAVNFPYM LHHMPDESVS TMNHRDRLLR LVKSLSPKIV ALVEQEMNTN
401: TAPFLPRFRE TLDYHKAMFE SVDVTRPRND MQRIRSEEHC IARDVVNLIA CEGADRVERH EVFGKWRSRL LMAGFTPCPL SPSVAETIKV MLKEYSSNYK
501: LAESQGALYI GWNNRALATS SAWQ

Best Arabidopsis Sequence Match ( AT4G17230.2 )
(BLAST)

001: MQTSQKHHSA AGLHMLYPQV YCSPQFQAKD NKGFSDIPSK ENFFTLESST ASGSLPSYDS PSVSITSGRS PFSPQGSQSC ISDLHHSPDN VYGSPLSGVS
101: SLAYDEAGVK SKIRELEVSL LSGDTKVEEF SGFSPAAGKS WNWDELLALT PQLDLKEVLV EAARAVADGD FATAYGFLDV LEQMVSVSGS PIQRLGTYMA
201: EGLRARLEGS GSNIYKSLKC NEPTGRELMS YMSVLYEICP YWKFAYTTAN VEILEAIAGE TRVHIIDFQI AQGSQYMFLI QELAKRPGGP PLLRVTGVDD
301: SQSTYARGGG LSLVGERLAT LAQSCGVPFE FHDAIMSGCK VQREHLGLEP GFAVVVNFPY VLHHMPDESV SVENHRDRLL HLIKSLSPKL VTLVEQESNT
401: NTSPFLSRFV ETLDYYTAMF ESIDAARPRD DKQRISAEQH CVARDIVNMI ACEESERVER HEVLGIWRVR MMMAGFTGWP VSTSAAFAAS EMLKAYDKNY
501: KLGGHEGALY LFWKRRPMAT CSVWKPNPN

Arabidopsis Description

SCL13SCARECROW-like 13 [Source:TAIR;Acc:AT4G17230]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.