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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • plastid 1
  • cytosol 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
ChloroP:plastid
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX82987 Canola nucleus 98.11 95.01
AT3G46600.1 Thale cress cytosol 82.65 82.5
Bra002564.1-P Field mustard endoplasmic reticulum, golgi 40.03 73.5
VIT_06s0004g04990.t01 Wine grape cytosol 34.19 45.02
TraesCS1B01G037500.1 Wheat cytosol 30.07 42.37
PGSC0003DMT400063769 Potato cytosol, nucleus, peroxisome 46.39 41.8
Solyc01g100200.2.1 Tomato nucleus 47.59 41.59
KRH10240 Soybean cytosol 42.44 40.76
Zm00001d034664_P001 Maize plastid 39.0 40.61
KRH23095 Soybean cytosol 45.19 40.03
KRH24773 Soybean nucleus 46.05 39.01
KRH29771 Soybean cytosol 45.19 38.68
HORVU3Hr1G012520.1 Barley cytosol 30.24 38.6
KRH23094 Soybean cytosol 36.25 38.16
Solyc06g082530.1.1 Tomato cytosol 42.44 37.83
VIT_06s0004g04980.t01 Wine grape nucleus 45.7 37.78
VIT_06s0004g04970.t01 Wine grape cytosol 42.61 37.69
PGSC0003DMT400078286 Potato nucleus 42.78 37.33
KXG37250 Sorghum cytosol 41.24 36.87
Os04t0590400-01 Rice cytosol, nucleus, peroxisome 40.03 36.64
GSMUA_Achr10P... Banana nucleus 27.66 36.43
Bra015584.1-P Field mustard cytosol 27.15 36.24
Bra028391.1-P Field mustard nucleus 38.32 35.97
HORVU5Hr1G113620.1 Barley cytosol, nucleus, peroxisome 39.18 35.4
GSMUA_Achr10P... Banana cytosol 36.08 35.06
TraesCS5D01G494900.1 Wheat cytosol 39.18 34.7
TraesCS5B01G494500.1 Wheat cytosol 39.18 34.7
Zm00001d035671_P001 Maize cytosol 37.29 34.66
TraesCS5A01G481300.1 Wheat cytosol 39.0 34.66
KXG21080 Sorghum cytosol 37.11 34.5
Bra000012.1-P Field mustard cytosol, nucleus, peroxisome 39.52 34.18
Zm00001d011070_P001 Maize cytosol 36.77 34.13
KXG38103 Sorghum cytosol 36.6 34.03
KXG21079 Sorghum cytosol 36.08 33.71
GSMUA_Achr7P15080_001 Banana cytosol 34.36 33.44
Bra026077.1-P Field mustard cytosol 16.67 32.99
Bra031580.1-P Field mustard cytosol 38.83 32.75
Bra031581.1-P Field mustard cytosol 37.46 32.63
Bra030688.1-P Field mustard nucleus 41.58 32.57
Os03t0690600-03 Rice cytosol 40.72 32.42
GSMUA_Achr6P34090_001 Banana nucleus 34.02 32.35
HORVU3Hr1G012550.6 Barley cytosol 32.82 32.05
OQU92829 Sorghum cytosol 40.21 31.88
Bra028390.1-P Field mustard cytosol 38.66 31.87
Zm00001d028603_P001 Maize cytosol 39.69 31.47
GSMUA_Achr8P02550_001 Banana nucleus 20.96 31.12
TraesCS1B01G037300.1 Wheat cytosol 36.25 29.97
Bra015156.1-P Field mustard cytosol 16.32 29.87
TraesCS1D01G030900.1 Wheat cytosol 36.08 29.45
Bra035653.1-P Field mustard cytosol 36.43 29.36
Zm00001d035670_P001 Maize cytosol 36.6 29.34
TraesCS1A01G030300.1 Wheat cytosol 35.57 29.32
TraesCS1D01G030800.1 Wheat cytosol 35.22 29.24
TraesCS1B01G037400.1 Wheat cytosol 35.91 28.91
TraesCS3D01G067900.1 Wheat nucleus 34.19 28.84
EES18882 Sorghum cytosol 36.25 28.79
TraesCS5A01G139000.1 Wheat cytosol, plastid 38.32 28.74
OQU91407 Sorghum nucleus 33.85 28.72
TraesCS1A01G030200.1 Wheat cytosol 35.57 28.71
TraesCS5D01G152700.1 Wheat cytosol, plastid 38.14 28.68
HORVU1Hr1G004440.1 Barley cytosol 35.4 28.65
TraesCS5B01G138100.1 Wheat cytosol, plastid 38.14 28.61
HORVU5Hr1G045020.29 Barley cytosol 38.49 28.46
TraesCS1D01G031000.1 Wheat cytosol 35.4 28.41
GSMUA_AchrUn_... Banana cytosol 31.79 28.07
Zm00001d047813_P002 Maize nucleus 39.86 27.99
TraesCS1D01G031200.1 Wheat cytosol 34.88 27.85
TraesCS3B01G081100.1 Wheat nucleus 34.02 27.69
EES18880 Sorghum cytosol 35.05 27.53
TraesCS3B01G080900.1 Wheat nucleus 33.85 27.32
Zm00001d033166_P001 Maize nucleus 34.36 27.32
TraesCS3D01G067700.1 Wheat cytosol 33.85 27.29
TraesCS3A01G068000.1 Wheat nucleus 33.51 27.23
TraesCS3B01G081000.1 Wheat cytosol 33.85 27.06
TraesCS3A01G067900.1 Wheat cytosol 33.51 27.01
KXG38064 Sorghum nucleus 33.16 26.81
EER91260 Sorghum nucleus 33.16 26.77
TraesCS3D01G067800.1 Wheat nucleus 30.76 26.48
OQU91406 Sorghum nucleus 34.02 26.47
TraesCS1B01G037200.1 Wheat nucleus 33.51 25.76
Bra017915.1-P Field mustard cytoskeleton, cytosol, nucleus, plastid 17.01 24.26
Bra036185.1-P Field mustard cytosol 20.27 23.84
Bra020715.1-P Field mustard cytosol, plastid 20.27 23.74
Bra018860.1-P Field mustard nucleus 20.96 23.24
Bra028312.1-P Field mustard cytosol 17.7 22.69
Bra021063.1-P Field mustard plastid 20.27 22.26
Bra026237.1-P Field mustard plastid 20.27 22.06
Bra022596.1-P Field mustard plastid 19.76 19.86
Bra012280.1-P Field mustard cytosol 18.73 19.85
Protein Annotations
MapMan:15.5.12EnsemblPlantsGene:Bra033813EnsemblPlants:Bra033813.1EnsemblPlants:Bra033813.1-PGO:GO:0006139GO:GO:0006351
GO:GO:0006355GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009719GO:GO:0009987
GO:GO:0010200InterPro:IPR005202UniProt:M4EYC1PFAM:PF03514PFscan:PS50985PANTHER:PTHR31636
PANTHER:PTHR31636:SF56InterPro:TF_GRASUniParc:UPI0002543B8BSEG:seg::
Description
AT3G46600 (E=2e-231) | scarecrow transcription factor family protein
Coordinates
chrA01:+:13954081..13955829
Molecular Weight (calculated)
66246.4 Da
IEP (calculated)
5.280
GRAVY (calculated)
-0.505
Length
582 amino acids
Sequence
(BLAST)
001: MDAILQVPVD GFRFDNGSGS CCKPRNNLDS GTSGFTSFKE SESQNLSSPT ESTESQNHSS PTESTVCSTN YPVLKYINDM LMEEDIEEQS CMLEDSLALQ
101: AAERSFFEVL QEDQNPLQDD SSLENLSPLT RRYHRLRDEE EEDDLEGGRK SKLPAISVVD ELAEKLEEVL LVCQKKDHGE ATPNQTGRAK GSLNRSKPQK
201: SDQPVDMRNL LMQCAQAVAS FDQSRAFEKL KEIREHSSSH GDATQRLGYH LANALEARIT GTMKTPAFDV LSRTSMVDIL KAYKEFVQAC PTLAMCYYTA
301: NRSIFELASK ATALHIVDFG ILYGFQWPCL IQALSARPGG PPKLRVTGIE LPQPGFRPSE RVEETGRRLK RFCDKFSVPF EYNFIAKAWD TITLDELVIN
401: SGETTVVNCI LRLQYTPDET VSLNSPRDTA LKLFRDINPD LFVFAEINGT YNSPFFLTRF REAMFHCSSL FDMFESNISE ENDCRTLVER ELIIKDAMSV
501: IACEGAERFA RPETYKQWQV RILRAGFRPA KLNKQIMKEG KELVRERYHK DFVIDNDNHW MFQGWKGRVL YALSCWKPAK KQ
Best Arabidopsis Sequence Match ( AT3G46600.1 )
(BLAST)
001: MDAILPVPVD GFRFDTGSGS CCKPRNNLES GTTNRFTCFN ESESQSNPSP TESKVCSDYL PVFKYINDML MEEDLEGQSC MLEDSLALQA AERSFFEVLQ
101: DQTPISGDLE DGSLGNFSSI TSLHQPEVSE ESTRRYRHRD DDEDDDLESG RKSKLPAIST VDELAEKFEE VLLVCQKNDQ GEATEKKTRH VKGSSNRYKQ
201: QKSDQPVDMR NLLMQCAQAV ASFDQRRAFE KLKEIREHSS RHGDATQRLG YHFAEALEAR ITGTMTTPIS ATSSRTSMVD ILKAYKGFVQ ACPTLIMCYF
301: TANRTINELA SKATTLHIID FGILYGFQWP CLIQALSKRD IGPPLLRVTG IELPQSGFRP SERVEETGRR LKRFCDKFNV PFEYSFIAKN WENITLDDLV
401: INSGETTVVN CILRLQYTPD ETVSLNSPRD TALKLFRDIN PDLFVFAEIN GTYNSPFFLT RFREALFHCS SLFDMYETTL SEDDNCRTLV ERELIIRDAM
501: SVIACEGSER FARPETYKQW QVRILRAGFR PAKLSKQIVK DGKEIVKERY HKDFVIDNDN HWMFQGWKGR VLYAVSCWKP AKK
Arabidopsis Description
SCL30Scarecrow-like protein 30 [Source:UniProtKB/Swiss-Prot;Acc:Q9SNB8]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.