Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY71578 | Canola | nucleus, plastid | 58.07 | 77.35 |
| CDY47878 | Canola | nucleus | 76.51 | 76.85 |
| Bra028390.1-P | Field mustard | cytosol | 76.8 | 75.5 |
| Bra035653.1-P | Field mustard | cytosol | 73.92 | 71.05 |
| CDY31749 | Canola | cytosol | 74.21 | 70.94 |
| CDX77228 | Canola | cytosol | 68.3 | 70.54 |
| AT1G07530.1 | Thale cress | cytosol | 70.75 | 63.85 |
| KRH24780 | Soybean | cytosol | 47.84 | 50.3 |
| VIT_06s0004g04950.t01 | Wine grape | cytosol | 50.43 | 46.42 |
| GSMUA_Achr10P... | Banana | nucleus | 29.11 | 45.7 |
| KRH29779 | Soybean | cytosol | 48.85 | 45.69 |
| TraesCS1B01G037500.1 | Wheat | cytosol | 26.51 | 44.55 |
| GSMUA_Achr8P02550_001 | Banana | nucleus | 24.35 | 43.11 |
| VIT_06s0004g04960.t01 | Wine grape | nucleus | 48.99 | 42.66 |
| KRH10243 | Soybean | nucleus | 40.78 | 42.56 |
| KRH23089 | Soybean | cytosol | 39.19 | 42.24 |
| AT2G29065.1 | Thale cress | cytosol, nucleus, plastid | 38.18 | 42.06 |
| Zm00001d034664_P001 | Maize | plastid | 33.72 | 41.86 |
| GSMUA_Achr10P... | Banana | cytosol | 36.02 | 41.74 |
| KRH23090 | Soybean | vacuole | 37.32 | 41.71 |
| HORVU3Hr1G012520.1 | Barley | cytosol | 27.09 | 41.23 |
| GSMUA_Achr6P34090_001 | Banana | nucleus | 36.02 | 40.85 |
| GSMUA_Achr7P15080_001 | Banana | cytosol | 34.87 | 40.47 |
| KXG38103 | Sorghum | cytosol | 36.46 | 40.42 |
| AT3G46600.1 | Thale cress | cytosol | 33.57 | 39.97 |
| Os04t0590400-01 | Rice | cytosol, nucleus, peroxisome | 36.31 | 39.62 |
| OQU92829 | Sorghum | cytosol | 41.64 | 39.37 |
| Os03t0690600-03 | Rice | cytosol | 41.07 | 38.99 |
| Zm00001d011070_P001 | Maize | cytosol | 35.16 | 38.92 |
| KXG21079 | Sorghum | cytosol | 34.87 | 38.84 |
| Zm00001d028603_P001 | Maize | cytosol | 40.78 | 38.56 |
| AT5G59450.1 | Thale cress | nucleus | 33.86 | 38.52 |
| AT2G37650.1 | Thale cress | cytosol | 39.63 | 38.3 |
| KXG21080 | Sorghum | cytosol | 34.44 | 38.18 |
| Zm00001d035671_P001 | Maize | cytosol | 34.15 | 37.86 |
| KXG37250 | Sorghum | cytosol | 35.45 | 37.79 |
| HORVU5Hr1G113620.1 | Barley | cytosol, nucleus, peroxisome | 34.58 | 37.27 |
| AT1G07520.3 | Thale cress | cytosol | 37.32 | 37.21 |
| TraesCS5A01G481300.1 | Wheat | cytosol | 35.01 | 37.1 |
| TraesCS5B01G494500.1 | Wheat | cytosol | 35.01 | 36.99 |
| TraesCS5D01G494900.1 | Wheat | cytosol | 35.01 | 36.99 |
| TraesCS5A01G139000.1 | Wheat | cytosol, plastid | 39.77 | 35.57 |
| TraesCS5D01G152700.1 | Wheat | cytosol, plastid | 39.63 | 35.53 |
| TraesCS5B01G138100.1 | Wheat | cytosol, plastid | 39.48 | 35.31 |
| HORVU3Hr1G012550.6 | Barley | cytosol | 30.26 | 35.23 |
| HORVU5Hr1G045020.29 | Barley | cytosol | 39.77 | 35.07 |
| Zm00001d047813_P002 | Maize | nucleus | 41.07 | 34.38 |
| GSMUA_AchrUn_... | Banana | cytosol | 32.42 | 34.14 |
| TraesCS1B01G037300.1 | Wheat | cytosol | 33.72 | 33.24 |
| EES18882 | Sorghum | cytosol | 34.44 | 32.61 |
| TraesCS3D01G067900.1 | Wheat | nucleus | 32.28 | 32.46 |
| TraesCS1A01G030300.1 | Wheat | cytosol | 32.85 | 32.29 |
| Zm00001d035670_P001 | Maize | cytosol | 33.72 | 32.23 |
| TraesCS3B01G080900.1 | Wheat | nucleus | 33.29 | 32.04 |
| TraesCS1D01G030900.1 | Wheat | cytosol | 32.85 | 31.98 |
| OQU91407 | Sorghum | nucleus | 31.56 | 31.92 |
| HORVU1Hr1G004440.1 | Barley | cytosol | 33.0 | 31.85 |
| TraesCS3D01G067800.1 | Wheat | nucleus | 30.98 | 31.8 |
| TraesCS3D01G067700.1 | Wheat | cytosol | 33.0 | 31.72 |
| TraesCS3A01G068000.1 | Wheat | nucleus | 32.71 | 31.7 |
| TraesCS1D01G030800.1 | Wheat | cytosol | 31.99 | 31.67 |
| EER91260 | Sorghum | nucleus | 32.85 | 31.62 |
| TraesCS3A01G067900.1 | Wheat | cytosol | 32.85 | 31.58 |
| TraesCS3B01G081100.1 | Wheat | nucleus | 32.28 | 31.33 |
| KXG38064 | Sorghum | nucleus | 32.42 | 31.25 |
| TraesCS3B01G081000.1 | Wheat | cytosol | 32.56 | 31.04 |
| TraesCS1D01G031000.1 | Wheat | cytosol | 32.42 | 31.03 |
| Zm00001d033166_P001 | Maize | nucleus | 32.56 | 30.87 |
| TraesCS1D01G031200.1 | Wheat | cytosol | 32.42 | 30.86 |
| TraesCS1B01G037400.1 | Wheat | cytosol | 31.99 | 30.71 |
| EES18880 | Sorghum | cytosol | 32.56 | 30.5 |
| OQU91406 | Sorghum | nucleus | 32.42 | 30.08 |
| TraesCS1A01G030200.1 | Wheat | cytosol | 30.98 | 29.82 |
| TraesCS1B01G037200.1 | Wheat | nucleus | 31.7 | 29.06 |
| AT2G04890.1 | Thale cress | cytosol | 17.15 | 28.81 |
| AT5G48150.4 | Thale cress | cytosol | 18.73 | 26.53 |
| AT4G17230.1 | Thale cress | cytosol | 19.74 | 25.9 |
| AT1G50600.2 | Thale cress | golgi, mitochondrion | 19.6 | 22.63 |
| AT1G21450.1 | Thale cress | nucleus | 17.72 | 20.74 |
| AT5G52510.1 | Thale cress | nucleus | 14.41 | 15.62 |
Protein Annotations
| MapMan:15.5.12 | EntrezGene:817454 | ProteinID:AAC33232.1 | ProteinID:AEC08204.1 | ArrayExpress:AT2G29060 | EnsemblPlantsGene:AT2G29060 |
| RefSeq:AT2G29060 | TAIR:AT2G29060 | RefSeq:AT2G29060-TAIR-G | EnsemblPlants:AT2G29060.1 | TAIR:AT2G29060.1 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:IPR005202 | RefSeq:NP_180470.2 |
| UniProt:P0C883 | PFAM:PF03514 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007115 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020100 |
| PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50985 | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF132 | InterPro:TF_GRAS |
| UniParc:UPI00017EE93F | SEG:seg | : | : | : | : |
Description
SCL33Scarecrow-like protein 33 [Source:UniProtKB/Swiss-Prot;Acc:P0C883]
Coordinates
chr2:+:12481664..12484420
Molecular Weight (calculated)
78105.4 Da
IEP (calculated)
5.889
GRAVY (calculated)
-0.408
Length
694 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSYSAGFPG SLDWFDFPGL GNGSYLNDQP LLDIGSVPPP LDPYPQQNLA SADADFSDSV LKYISQVLME EDMEDKPCMF HDALSLQAAE KSLYEALGEK
101: YPVDDSDQPL TTTTSLAQLV SSPGGSSYAS STTTTSSDSQ WSFDCLENNR PSSWLQTPIP SNFIFQSTST RASSGNAVFG SSFSGDLVSN MFNDTDLALQ
201: FKKGMEEASK FLPKSSQLVI DNSVPNRLTG KKSHWREEEH LTEERSKKQS AIYVDETDEL TDMFDNILIF GEAKEQPVCI LNESFPKEPA KASTFSKSPK
301: GEKPEASGNS YTKETPDLRT MLVSCAQAVS INDRRTADEL LSRIRQHSSS YGDGTERLAH YFANSLEARL AGIGTQVYTA LSSKKTSTSD MLKAYQTYIS
401: VCPFKKIAII FANHSIMRLA SSANAKTIHI IDFGISDGFQ WPSLIHRLAW RRGSSCKLRI TGIELPQRGF RPAEGVIETG RRLAKYCQKF NIPFEYNAIA
501: QKWESIKLED LKLKEGEFVA VNSLFRFRNL LDETVAVHSP RDTVLKLIRK IKPDVFIPGI LSGSYNAPFF VTRFREVLFH YSSLFDMCDT NLTREDPMRV
601: MFEKEFYGRE IMNVVACEGT ERVERPESYK QWQARAMRAG FRQIPLEKEL VQKLKLMVES GYKPKEFDVD QDCHWLLQGW KGRIVYGSSI WVPL
101: YPVDDSDQPL TTTTSLAQLV SSPGGSSYAS STTTTSSDSQ WSFDCLENNR PSSWLQTPIP SNFIFQSTST RASSGNAVFG SSFSGDLVSN MFNDTDLALQ
201: FKKGMEEASK FLPKSSQLVI DNSVPNRLTG KKSHWREEEH LTEERSKKQS AIYVDETDEL TDMFDNILIF GEAKEQPVCI LNESFPKEPA KASTFSKSPK
301: GEKPEASGNS YTKETPDLRT MLVSCAQAVS INDRRTADEL LSRIRQHSSS YGDGTERLAH YFANSLEARL AGIGTQVYTA LSSKKTSTSD MLKAYQTYIS
401: VCPFKKIAII FANHSIMRLA SSANAKTIHI IDFGISDGFQ WPSLIHRLAW RRGSSCKLRI TGIELPQRGF RPAEGVIETG RRLAKYCQKF NIPFEYNAIA
501: QKWESIKLED LKLKEGEFVA VNSLFRFRNL LDETVAVHSP RDTVLKLIRK IKPDVFIPGI LSGSYNAPFF VTRFREVLFH YSSLFDMCDT NLTREDPMRV
601: MFEKEFYGRE IMNVVACEGT ERVERPESYK QWQARAMRAG FRQIPLEKEL VQKLKLMVES GYKPKEFDVD QDCHWLLQGW KGRIVYGSSI WVPL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.