Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY39530 | Canola | cytosol | 79.05 | 80.45 |
| CDY47877 | Canola | nucleus | 77.62 | 79.13 |
| Bra028391.1-P | Field mustard | nucleus | 77.62 | 78.87 |
| AT1G07520.3 | Thale cress | cytosol | 63.65 | 57.61 |
| PGSC0003DMT400005480 | Potato | cytosol | 37.46 | 48.46 |
| GSMUA_Achr10P... | Banana | nucleus | 31.75 | 45.25 |
| KRH29773 | Soybean | cytosol | 43.81 | 44.95 |
| HORVU3Hr1G012520.1 | Barley | cytosol | 32.22 | 44.52 |
| TraesCS1B01G037500.1 | Wheat | cytosol | 29.05 | 44.31 |
| KRH29774 | Soybean | cytosol | 43.49 | 43.42 |
| KRH29775 | Soybean | nucleus | 46.35 | 43.39 |
| KRH24778 | Soybean | nucleus | 45.4 | 42.31 |
| KRH23091 | Soybean | endoplasmic reticulum, plasma membrane | 49.68 | 42.13 |
| Solyc06g076280.1.1 | Tomato | cytosol | 49.52 | 41.71 |
| PGSC0003DMT400077972 | Potato | cytosol | 49.05 | 41.09 |
| KRH10241 | Soybean | cytosol, nucleus, peroxisome | 44.6 | 40.84 |
| KRH24775 | Soybean | cytosol | 43.97 | 40.74 |
| GSMUA_Achr10P... | Banana | cytosol | 38.73 | 40.73 |
| Os04t0590400-01 | Rice | cytosol, nucleus, peroxisome | 39.68 | 39.31 |
| AT3G46600.1 | Thale cress | cytosol | 36.35 | 39.28 |
| KXG38103 | Sorghum | cytosol | 38.25 | 38.5 |
| AT2G29060.1 | Thale cress | cytosol | 42.06 | 38.18 |
| GSMUA_Achr7P15080_001 | Banana | cytosol | 36.19 | 38.13 |
| GSMUA_Achr8P02550_001 | Banana | nucleus | 23.49 | 37.76 |
| Zm00001d034664_P001 | Maize | plastid | 33.49 | 37.75 |
| KXG21080 | Sorghum | cytosol | 37.3 | 37.54 |
| HORVU5Hr1G113620.1 | Barley | cytosol, nucleus, peroxisome | 38.25 | 37.42 |
| Os03t0690600-03 | Rice | cytosol | 43.33 | 37.35 |
| Zm00001d028603_P001 | Maize | cytosol | 43.49 | 37.33 |
| AT1G07530.1 | Thale cress | cytosol | 45.56 | 37.32 |
| Zm00001d011070_P001 | Maize | cytosol | 37.14 | 37.32 |
| GSMUA_Achr6P34090_001 | Banana | nucleus | 36.19 | 37.25 |
| OQU92829 | Sorghum | cytosol | 43.33 | 37.19 |
| Zm00001d035671_P001 | Maize | cytosol | 36.67 | 36.9 |
| TraesCS5D01G494900.1 | Wheat | cytosol | 38.41 | 36.83 |
| TraesCS5B01G494500.1 | Wheat | cytosol | 38.41 | 36.83 |
| TraesCS5A01G481300.1 | Wheat | cytosol | 38.25 | 36.79 |
| KXG21079 | Sorghum | cytosol | 36.35 | 36.76 |
| AT5G59450.1 | Thale cress | nucleus | 35.56 | 36.72 |
| HORVU3Hr1G012550.6 | Barley | cytosol | 34.44 | 36.41 |
| AT2G37650.1 | Thale cress | cytosol | 39.68 | 34.82 |
| KXG37250 | Sorghum | cytosol | 35.71 | 34.56 |
| TraesCS5D01G152700.1 | Wheat | cytosol, plastid | 41.43 | 33.72 |
| TraesCS5A01G139000.1 | Wheat | cytosol, plastid | 41.43 | 33.63 |
| TraesCS5B01G138100.1 | Wheat | cytosol, plastid | 41.27 | 33.51 |
| TraesCS1B01G037300.1 | Wheat | cytosol | 37.14 | 33.24 |
| TraesCS1D01G030900.1 | Wheat | cytosol | 37.46 | 33.1 |
| HORVU5Hr1G045020.29 | Barley | cytosol | 41.27 | 33.04 |
| TraesCS1D01G030800.1 | Wheat | cytosol | 36.67 | 32.95 |
| Zm00001d047813_P002 | Maize | nucleus | 43.17 | 32.81 |
| HORVU1Hr1G004440.1 | Barley | cytosol | 37.3 | 32.68 |
| TraesCS1A01G030300.1 | Wheat | cytosol | 36.51 | 32.58 |
| TraesCS3D01G067900.1 | Wheat | nucleus | 35.56 | 32.46 |
| TraesCS1B01G037400.1 | Wheat | cytosol | 36.98 | 32.23 |
| KXG38064 | Sorghum | nucleus | 36.67 | 32.08 |
| GSMUA_AchrUn_... | Banana | cytosol | 33.49 | 32.02 |
| Zm00001d033166_P001 | Maize | nucleus | 37.14 | 31.97 |
| OQU91407 | Sorghum | nucleus | 34.76 | 31.92 |
| EER91260 | Sorghum | nucleus | 36.35 | 31.76 |
| TraesCS1D01G031000.1 | Wheat | cytosol | 36.03 | 31.31 |
| TraesCS3B01G081100.1 | Wheat | nucleus | 35.4 | 31.19 |
| TraesCS3A01G068000.1 | Wheat | nucleus | 35.4 | 31.15 |
| TraesCS1A01G030200.1 | Wheat | cytosol | 35.56 | 31.07 |
| TraesCS3D01G067700.1 | Wheat | cytosol | 35.56 | 31.02 |
| TraesCS3D01G067800.1 | Wheat | nucleus | 33.17 | 30.92 |
| Zm00001d035670_P001 | Maize | cytosol | 35.4 | 30.72 |
| TraesCS3B01G080900.1 | Wheat | nucleus | 35.08 | 30.65 |
| TraesCS3A01G067900.1 | Wheat | cytosol | 35.08 | 30.61 |
| EES18882 | Sorghum | cytosol | 35.56 | 30.56 |
| TraesCS3B01G081000.1 | Wheat | cytosol | 35.24 | 30.49 |
| OQU91406 | Sorghum | nucleus | 35.87 | 30.21 |
| TraesCS1D01G031200.1 | Wheat | cytosol | 34.92 | 30.18 |
| EES18880 | Sorghum | cytosol | 35.24 | 29.96 |
| TraesCS1B01G037200.1 | Wheat | nucleus | 33.81 | 28.14 |
| AT2G04890.1 | Thale cress | cytosol | 17.94 | 27.36 |
| AT5G48150.4 | Thale cress | cytosol | 20.95 | 26.94 |
| AT4G17230.1 | Thale cress | cytosol | 21.11 | 25.14 |
| AT1G50600.2 | Thale cress | golgi, mitochondrion | 21.43 | 22.46 |
| AT1G21450.1 | Thale cress | nucleus | 20.48 | 21.75 |
| AT5G52510.1 | Thale cress | nucleus | 16.83 | 16.56 |
Protein Annotations
| EntrezGene:10723125 | MapMan:15.5.12 | ProteinID:AAC33232.1 | ProteinID:AEC08205.1 | ArrayExpress:AT2G29065 | EnsemblPlantsGene:AT2G29065 |
| RefSeq:AT2G29065 | TAIR:AT2G29065 | RefSeq:AT2G29065-TAIR-G | EnsemblPlants:AT2G29065.1 | TAIR:AT2G29065.1 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:IPR005202 | RefSeq:NP_001189628.1 |
| UniProt:P0C884 | PFAM:PF03514 | PO:PO:0000293 | PFscan:PS50985 | PANTHER:PTHR31636 | PANTHER:PTHR31636:SF129 |
| InterPro:TF_GRAS | UniParc:UPI00017EE940 | SEG:seg | : | : | : |
Description
SCL34Scarecrow-like protein 34 [Source:UniProtKB/Swiss-Prot;Acc:P0C884]
Coordinates
chr2:+:12484658..12487110
Molecular Weight (calculated)
72533.0 Da
IEP (calculated)
5.240
GRAVY (calculated)
-0.520
Length
630 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPNFSESLN GFEYFDGNPN LLTDPMEDQY PPPSDTLLKY VSEILMEESN GDYKQSMFYD SLALRKTEEM LQQVITDSQN QSFSPADSLI TNSWDASGSI
101: DESAYSADPQ PVNEIMVKSM FSDAESALQF KKGVEEASKF LPNSDQWVIN LDIERSERRD SVKEEMGLDQ LRVKKNHERD FEEVRSSKQF ASNVEDSKVT
201: DMFDKVLLLD GECDPQTLLD SEIQAIRSSK NIGEKGKKKK KKKSQVVDFR TLLTHCAQAI STGDKTTALE FLLQIRQQSS PLGDAGQRLA HCFANALEAR
301: LQGSTGPMIQ TYYNALTSSL KDTAADTIRA YRVYLSSSPF VTLMYFFSIW MILDVAKDAP VLHIVDFGIL YGFQWPMFIQ SISDRKDVPR KLRITGIELP
401: QCGFRPAERI EETGRRLAEY CKRFNVPFEY KAIASQNWET IRIEDLDIRP NEVLAVNAGL RLKNLQDETG SEENCPRDAV LKLIRNMNPD VFIHAIVNGS
501: FNAPFFISRF KEAVYHYSAL FDMFDSTLPR DNKERIRFER EFYGREAMNV IACEEADRVE RPETYRQWQV RMVRAGFKQK TIKPELVELF RGKLKKWRYH
601: KDFVVDENSK WLLQGWKGRT LYASSCWVPA
101: DESAYSADPQ PVNEIMVKSM FSDAESALQF KKGVEEASKF LPNSDQWVIN LDIERSERRD SVKEEMGLDQ LRVKKNHERD FEEVRSSKQF ASNVEDSKVT
201: DMFDKVLLLD GECDPQTLLD SEIQAIRSSK NIGEKGKKKK KKKSQVVDFR TLLTHCAQAI STGDKTTALE FLLQIRQQSS PLGDAGQRLA HCFANALEAR
301: LQGSTGPMIQ TYYNALTSSL KDTAADTIRA YRVYLSSSPF VTLMYFFSIW MILDVAKDAP VLHIVDFGIL YGFQWPMFIQ SISDRKDVPR KLRITGIELP
401: QCGFRPAERI EETGRRLAEY CKRFNVPFEY KAIASQNWET IRIEDLDIRP NEVLAVNAGL RLKNLQDETG SEENCPRDAV LKLIRNMNPD VFIHAIVNGS
501: FNAPFFISRF KEAVYHYSAL FDMFDSTLPR DNKERIRFER EFYGREAMNV IACEEADRVE RPETYRQWQV RMVRAGFKQK TIKPELVELF RGKLKKWRYH
601: KDFVVDENSK WLLQGWKGRT LYASSCWVPA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.