Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G141100.1 | Wheat | cytosol | 88.51 | 91.89 |
| TraesCS4D01G136000.1 | Wheat | cytosol | 91.12 | 91.68 |
| TraesCS4A01G176600.1 | Wheat | cytosol | 91.12 | 91.68 |
| HORVU4Hr1G027610.1 | Barley | cytosol | 52.37 | 50.52 |
| HORVU4Hr1G027900.1 | Barley | cytosol | 50.54 | 49.85 |
| OQU84116 | Sorghum | nucleus | 45.79 | 48.3 |
| GSMUA_Achr5P08320_001 | Banana | cytosol | 31.39 | 45.66 |
| HORVU4Hr1G027920.1 | Barley | peroxisome | 54.82 | 45.15 |
| HORVU4Hr1G080460.5 | Barley | cytosol | 39.66 | 44.5 |
| HORVU5Hr1G020900.1 | Barley | cytosol | 48.85 | 42.82 |
| HORVU4Hr1G027480.1 | Barley | endoplasmic reticulum, extracellular, plasma membrane | 44.72 | 41.3 |
| HORVU3Hr1G012520.1 | Barley | cytosol | 28.33 | 40.57 |
| HORVU5Hr1G113620.1 | Barley | cytosol, nucleus, peroxisome | 37.21 | 37.73 |
| Os11t0139600-01 | Rice | nucleus | 31.85 | 35.68 |
| HORVU3Hr1G012550.6 | Barley | cytosol | 30.47 | 33.39 |
| HORVU3Hr1G086210.1 | Barley | cytosol, nucleus, plasma membrane | 40.28 | 33.25 |
| HORVU5Hr1G045020.29 | Barley | cytosol | 39.82 | 33.04 |
| HORVU1Hr1G004440.1 | Barley | cytosol | 33.54 | 30.46 |
| HORVU3Hr1G091250.1 | Barley | cytosol | 19.6 | 23.19 |
| HORVU2Hr1G036280.1 | Barley | cytosol | 19.3 | 22.62 |
| HORVU4Hr1G071670.1 | Barley | cytosol | 18.22 | 22.2 |
| HORVU2Hr1G043780.1 | Barley | cytosol | 18.84 | 21.58 |
| HORVU5Hr1G099160.1 | Barley | plastid | 19.75 | 20.48 |
| HORVU2Hr1G094040.2 | Barley | cytosol, plastid | 10.26 | 17.4 |
Protein Annotations
| EnsemblPlants:HORVU4Hr1G027520.2 | EnsemblPlantsGene:HORVU4Hr1G027520 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR005202 | InterPro:TF_GRAS | ncoils:Coil |
| PANTHER:PTHR31636 | PANTHER:PTHR31636:SF124 | PFAM:PF03514 | PFscan:PS50985 | SEG:seg | UniParc:UPI000B481394 |
| UniProt:A0A287NN41 | MapMan:15.5.12 | : | : | : | : |
Description
No Description!
Coordinates
chrchr4H:-:169282885..169284846
Molecular Weight (calculated)
72814.3 Da
IEP (calculated)
5.447
GRAVY (calculated)
-0.313
Length
653 amino acids
Sequence
(BLAST)
(BLAST)
001: IAIIPEELLG LLKEHMEPPP PSPSVYLDIP PSPYGGSVGD LVLPYITRIL MEEDIDDRFF YQYPDHLHLL QAQQQFAQIF DDAKNLLSGE GGDMQEMHSG
101: VSLKGIRGGS MCLADKGIQC WAFSDGAEVD NSGDQSKLNP SNEDKDMLNF AFLKGMEEAN KFLPRDNELQ ADVLSVDQAK ETFGRSISGG GRKGRCDVDK
201: LEEVVGRASK LMMPELEEDG AREMMDKIML NSYELCGETM EKLQITMENM RADSKNKKAV RGGKQGKKEA VDLRGLLLCC AQEVATGNRH GAANLLKQIR
301: QHASATGDAA QRLAHCFGKG LEARLAGTGS QVYKSLMAKH TSTMEFLQGY ELFMAACSFK RVAFTFSSMT IFDALEGKSK LHIVDYGLHY GCQWPGLLAW
401: LATKDGGPPE VRITGIDLPQ PGFRPAKRLE ETGRALSNCA LQFGLPFKFH GIVAKWETIR AKDLNIDPDE VLVVNDLFNF NTLMDESLVM DRPSPRDVVL
501: SNIREMQPDV FIQGVVNGSS GPFFLARFRE ALFFYSSVFD MLDATTPPES YQRLVLERDM FGQCALNTIA CESADRVERP ETYKQWQLRN QRAGLTQLPL
601: KPIITKVATG KVKSLYHKEF VVDVDQGWLL QGWKGRILYA HSAWVADHTS SDY
101: VSLKGIRGGS MCLADKGIQC WAFSDGAEVD NSGDQSKLNP SNEDKDMLNF AFLKGMEEAN KFLPRDNELQ ADVLSVDQAK ETFGRSISGG GRKGRCDVDK
201: LEEVVGRASK LMMPELEEDG AREMMDKIML NSYELCGETM EKLQITMENM RADSKNKKAV RGGKQGKKEA VDLRGLLLCC AQEVATGNRH GAANLLKQIR
301: QHASATGDAA QRLAHCFGKG LEARLAGTGS QVYKSLMAKH TSTMEFLQGY ELFMAACSFK RVAFTFSSMT IFDALEGKSK LHIVDYGLHY GCQWPGLLAW
401: LATKDGGPPE VRITGIDLPQ PGFRPAKRLE ETGRALSNCA LQFGLPFKFH GIVAKWETIR AKDLNIDPDE VLVVNDLFNF NTLMDESLVM DRPSPRDVVL
501: SNIREMQPDV FIQGVVNGSS GPFFLARFRE ALFFYSSVFD MLDATTPPES YQRLVLERDM FGQCALNTIA CESADRVERP ETYKQWQLRN QRAGLTQLPL
601: KPIITKVATG KVKSLYHKEF VVDVDQGWLL QGWKGRILYA HSAWVADHTS SDY
001: MGSYSAGFPG SLDWFDFPGL GNGSYLNDQP LLDIGSVPPP LDPYPQQNLA SADADFSDSV LKYISQVLME EDMEDKPCMF HDALSLQAAE KSLYEALGEK
101: YPVDDSDQPL TTTTSLAQLV SSPGGSSYAS STTTTSSDSQ WSFDCLENNR PSSWLQTPIP SNFIFQSTST RASSGNAVFG SSFSGDLVSN MFNDTDLALQ
201: FKKGMEEASK FLPKSSQLVI DNSVPNRLTG KKSHWREEEH LTEERSKKQS AIYVDETDEL TDMFDNILIF GEAKEQPVCI LNESFPKEPA KASTFSKSPK
301: GEKPEASGNS YTKETPDLRT MLVSCAQAVS INDRRTADEL LSRIRQHSSS YGDGTERLAH YFANSLEARL AGIGTQVYTA LSSKKTSTSD MLKAYQTYIS
401: VCPFKKIAII FANHSIMRLA SSANAKTIHI IDFGISDGFQ WPSLIHRLAW RRGSSCKLRI TGIELPQRGF RPAEGVIETG RRLAKYCQKF NIPFEYNAIA
501: QKWESIKLED LKLKEGEFVA VNSLFRFRNL LDETVAVHSP RDTVLKLIRK IKPDVFIPGI LSGSYNAPFF VTRFREVLFH YSSLFDMCDT NLTREDPMRV
601: MFEKEFYGRE IMNVVACEGT ERVERPESYK QWQARAMRAG FRQIPLEKEL VQKLKLMVES GYKPKEFDVD QDCHWLLQGW KGRIVYGSSI WVPL
101: YPVDDSDQPL TTTTSLAQLV SSPGGSSYAS STTTTSSDSQ WSFDCLENNR PSSWLQTPIP SNFIFQSTST RASSGNAVFG SSFSGDLVSN MFNDTDLALQ
201: FKKGMEEASK FLPKSSQLVI DNSVPNRLTG KKSHWREEEH LTEERSKKQS AIYVDETDEL TDMFDNILIF GEAKEQPVCI LNESFPKEPA KASTFSKSPK
301: GEKPEASGNS YTKETPDLRT MLVSCAQAVS INDRRTADEL LSRIRQHSSS YGDGTERLAH YFANSLEARL AGIGTQVYTA LSSKKTSTSD MLKAYQTYIS
401: VCPFKKIAII FANHSIMRLA SSANAKTIHI IDFGISDGFQ WPSLIHRLAW RRGSSCKLRI TGIELPQRGF RPAEGVIETG RRLAKYCQKF NIPFEYNAIA
501: QKWESIKLED LKLKEGEFVA VNSLFRFRNL LDETVAVHSP RDTVLKLIRK IKPDVFIPGI LSGSYNAPFF VTRFREVLFH YSSLFDMCDT NLTREDPMRV
601: MFEKEFYGRE IMNVVACEGT ERVERPESYK QWQARAMRAG FRQIPLEKEL VQKLKLMVES GYKPKEFDVD QDCHWLLQGW KGRIVYGSSI WVPL
Arabidopsis Description
SCL33Scarecrow-like protein 33 [Source:UniProtKB/Swiss-Prot;Acc:P0C883]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.