Factsheet for HORVU6Hr1G052010.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plasma membrane 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G227500.1	Wheat	cytosol, peroxisome, plastid	94.78	94.78
Os02t0574900-01	Rice	cytosol	80.22	80.22
EES05304	Sorghum	cytosol, peroxisome, plastid	76.09	76.25
Zm00001d050862_P001	Maize	cytosol, peroxisome, plastid	73.91	74.56
GSMUA_Achr6P04050_001	Banana	cytosol	59.35	60.0
VIT_18s0001g04730.t01	Wine grape	cytosol, plastid	60.0	57.86
VIT_12s0055g00910.t01	Wine grape	cytosol	58.48	56.16
KRH58301	Soybean	cytosol	57.17	54.68
KRH42190	Soybean	cytosol, plastid	56.52	54.05
Solyc01g104980.2.1	Tomato	cytosol, plastid	55.22	53.47
CDY00415	Canola	mitochondrion	24.78	53.27
KRH18847	Soybean	cytosol	55.0	53.26
PGSC0003DMT400032733	Potato	cytosol, plastid	55.0	53.26
KRH53131	Soybean	cytosol	55.0	53.15
KRH16647	Soybean	cytosol, plastid	55.0	53.04
KRH72270	Soybean	cytosol	15.0	52.67
GSMUA_Achr10P...	Banana	cytosol	59.35	52.5
AT1G22040.1	Thale cress	plastid	53.91	52.21
KRH62415	Soybean	cytosol	30.87	51.45
CDY01300	Canola	cytosol	24.78	50.89
HORVU7Hr1G002140.2	Barley	mitochondrion	50.87	49.06
Bra012304.1-P	Field mustard	cytosol	47.61	46.9
CDY01301	Canola	cytosol	15.87	46.5
CDY30645	Canola	nucleus	22.17	45.74
CDY04697	Canola	cytosol	21.96	45.29
Bra031360.1-P	Field mustard	plastid	22.61	42.62
KRH55297	Soybean	cytosol	25.65	40.27
HORVU6Hr1G007030.1	Barley	cytosol	18.7	24.86
HORVU2Hr1G057140.1	Barley	cytosol	10.0	24.73
HORVU2Hr1G057150.1	Barley	cytosol	10.0	24.73
HORVU6Hr1G037850.2	Barley	plastid	21.96	23.71
HORVU6Hr1G007080.1	Barley	cytosol	4.35	22.99
HORVU4Hr1G074720.7	Barley	plasma membrane	21.52	22.55
HORVU3Hr1G096780.1	Barley	cytosol, plastid	18.7	22.34
HORVU2Hr1G068790.2	Barley	cytosol	18.48	22.14
HORVU1Hr1G035200.1	Barley	plasma membrane	22.17	21.47
HORVU4Hr1G075310.1	Barley	cytosol	20.22	21.18
HORVU3Hr1G116690.2	Barley	mitochondrion	21.52	20.33
HORVU6Hr1G075590.1	Barley	cytosol, nucleus, plastid	18.48	20.0
HORVU7Hr1G000010.5	Barley	cytosol	18.91	19.86
HORVU2Hr1G103880.2	Barley	cytosol	19.13	19.73
HORVU7Hr1G000070.1	Barley	cytosol	17.61	15.43

Protein Annotations

Gene3D:2.120.10.80	MapMan:35.1	EMBL:AK369268	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	UniProt:F2DZE8
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:HORVU6Hr1G052010	EnsemblPlants:HORVU6Hr1G052010.1	InterPro:IPR001810
InterPro:IPR015915	InterPro:Kelch-typ_b-propeller	InterPro:Kelch_1	PFAM:PF00646	PFAM:PF01344	PFscan:PS50181
PANTHER:PTHR24414	PANTHER:PTHR24414:SF45	SMART:SM00256	SMART:SM00612	SUPFAM:SSF117281	SUPFAM:SSF81383
UniParc:UPI000200764C	:	:	:	:	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2DZE8]

Coordinates

chrchr6H:-:319428413..319430908

Molecular Weight (calculated)

51344.5 Da

IEP (calculated)

6.007

GRAVY (calculated)

-0.114

Length

460 amino acids

Sequence
(BLAST)

001: MGSYLSTATS KTRSVDSDEV HGSVLNKRAK ITTYDCGSYS RIIPTLPDEL SFQILARLPR IYYLKMKMVS RTWKAAITGS ELAQLRRELG LTEEWLYILT
101: RVEANKLECY ALDPLFQKWQ RLPSMPLFAN EADSTGRTRC SAFQMWNVVG SSIRIADFFR GWFCRRYGLD QMPFCGCSVG VADGCLYVLG GFSKAVALDC
201: VWRYDPCHNL WQEVNPMISG RAFSKASLLE SKLYVVGGVS RGRNGLLPLR SGEVFDPKTG LWSELPEMPF VKAQVLPTAF LADVLKPIAT GMASYNGKLY
301: VPQSLYSWPF FFDIGGEIYD SELNSWSTMP DGLGDGWPAR QAGTKLGVVV NDELYTLEPS SSLDSGQIKR YDAEEDVWRT MVPHIPVHDF TDAESPYLLT
401: GLHGRLHVIT KEANNNLQVI QAVLENNTGN DVPEGNVLWN IVASKNFGAA ELISCQVLNV

Best Arabidopsis Sequence Match ( AT1G22040.1 )
(BLAST)

001: MGSVMSLSCS KRKATSQDVE CSSESRKRRK ISSENDEEEC CRLIPSLPDE LSIQILARLP RICYSSVRLV SRRWRSAVST SEVYSLRKEL GRTEEWLYVL
101: TKGHEDKLLW YALDPVSTKW QRLPPMPVVV YEEESRKSLS GLWNMITPSF NVGAIVRSFL GRRDSSEQMP FCGCAIGAVD GGLYVIGGLS RSKTVSCVWR
201: FDPILNSWSE VSSMLASRAY SKTGVLNKKL YVVGGVDRGR GGLSPLQSAE VYDPSTDAWS EVPSMPFSKA QVLPNAFLAD LLKPIATGMT CYNGRLCVPQ
301: SLYSWPFFVD VGGEVYDPET NLWVEMPSGM GEGWPARQAG TKLSVVVDGE LYAFDPSSSM ENGKIKVYDQ KEDTWKVVIG EVPVYDLTDS ESPYLLAGFH
401: GKLHFITRDP NHNVTVLRAD VPNIPVSSSS SSSSSVSIPH LKTNAPNKSD TVTWKLIATK DFGAAELVSC QVIDI

Arabidopsis Description

F-box/kelch-repeat protein At1g22040 [Source:UniProtKB/Swiss-Prot;Acc:Q9LM55]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.