Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- cytosol 1
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G54190.1 | Thale cress | plastid | 89.72 | 89.72 |
| VIT_08s0056g00230.t01 | Wine grape | plastid | 83.08 | 83.62 |
| Os05t0482600-01 | Rice | plastid | 77.73 | 79.78 |
| EES18406 | Sorghum | plastid | 77.73 | 79.61 |
| Zm00001d038513_P002 | Maize | plastid | 75.8 | 77.29 |
| TraesCS1A01G303300.1 | Wheat | mitochondrion, plastid | 74.73 | 76.7 |
| TraesCS1D01G302800.1 | Wheat | mitochondrion, plastid | 74.73 | 76.7 |
| TraesCS1B01G313700.1 | Wheat | plastid | 74.3 | 76.26 |
| HORVU1Hr1G069210.3 | Barley | nucleus, plastid | 73.88 | 75.82 |
| Zm00001d010625_P003 | Maize | plastid | 77.3 | 74.13 |
| Os01t0817800-01 | Rice | plastid | 71.95 | 74.01 |
| TraesCS3D01G334700.1 | Wheat | nucleus, plastid | 69.38 | 72.16 |
| HORVU3Hr1G080560.3 | Barley | nucleus, plastid | 69.38 | 72.16 |
| KRH40628 | Soybean | plastid | 74.3 | 72.14 |
| TraesCS3A01G341100.1 | Wheat | nucleus, plastid | 69.16 | 71.94 |
| KRH00534 | Soybean | plastid | 73.02 | 71.19 |
| TraesCS3B01G373200.1 | Wheat | nucleus | 61.67 | 64.0 |
| KRH40627 | Soybean | extracellular, plasma membrane | 33.4 | 59.32 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:35.2 | EntrezGene:818445 | ProteinID:AEC09559.1 | ArrayExpress:AT2G38630 | EnsemblPlantsGene:AT2G38630 |
| RefSeq:AT2G38630 | TAIR:AT2G38630 | RefSeq:AT2G38630-TAIR-G | EnsemblPlants:AT2G38630.1 | TAIR:AT2G38630.1 | EMBL:BT004257 |
| EMBL:BT005523 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0008150 | InterPro:IPR015943 |
| RefSeq:NP_181397.2 | PO:PO:0000293 | PANTHER:PTHR31789 | UniProt:Q84J57 | SUPFAM:SSF69322 | UniParc:UPI000000C306 |
| InterPro:WD40/YVTN_repeat-like_dom_sf | : | : | : | : | : |
Description
Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q84J57]
Coordinates
chr2:-:16153806..16156579
Molecular Weight (calculated)
53467.7 Da
IEP (calculated)
8.138
GRAVY (calculated)
-0.346
Length
467 amino acids
Sequence
(BLAST)
(BLAST)
001: MMEGRRIIAN PRPCSGSRRV IAKKRSRPDG FVNSVKKLQR REISSRMDRA FSISTAQERF RNMRLVEQYD THDPKGYCLV SLPNLLKRSK VIEIVAARDI
101: VFALTLSGVC ASFSRETNKK VCFLNVSPDE VIRSLFYNKN NDSLITVSVY ASDNYSSLKC RSTRIEYILR GQADAGFPLF ESESLKWPGF VEFDDVNGKV
201: LTYSAQDSVY KVFDLKNYAL LYSISDKNVQ EIKISPGIML LIFKRAASHV PLKILSIEDG TLLKSFHHLL HRNKKVDFIE QFNEKLLVKQ ENENLQILDV
301: RNAELIEVSR TDFMTPSAFI FLYENQLFLT FRNRNVSVWN FRGELVTSFE DHLLWHPDCN TNNIYITSDQ DLIISYCKAD TEDQWIEGNA GSINISNILT
401: GKCLAKIKAN NGPPKEEDCS SSDLGNSSRR RSAVAEALED ITALFYDEER NEIYTGNRHG LLHVWSN
101: VFALTLSGVC ASFSRETNKK VCFLNVSPDE VIRSLFYNKN NDSLITVSVY ASDNYSSLKC RSTRIEYILR GQADAGFPLF ESESLKWPGF VEFDDVNGKV
201: LTYSAQDSVY KVFDLKNYAL LYSISDKNVQ EIKISPGIML LIFKRAASHV PLKILSIEDG TLLKSFHHLL HRNKKVDFIE QFNEKLLVKQ ENENLQILDV
301: RNAELIEVSR TDFMTPSAFI FLYENQLFLT FRNRNVSVWN FRGELVTSFE DHLLWHPDCN TNNIYITSDQ DLIISYCKAD TEDQWIEGNA GSINISNILT
401: GKCLAKIKAN NGPPKEEDCS SSDLGNSSRR RSAVAEALED ITALFYDEER NEIYTGNRHG LLHVWSN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.