Factsheet for Zm00001d038513_P002

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d007596_P001
Zm00001d014203_P001
Zm00001d023402_P001
Zm00001d023411_P001
Zm00001d023606_P005
Zm00001d027856_P001
Zm00001d033012_P001
Zm00001d041839_P001
Zm00001d048310_P001
Zm00001d048898_P001
Zm00001d052253_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54190.1	Zm00001d007596_P001	AT1G14330.1	21798944
AT3G54190.1	Zm00001d014203_P001	AT1G14330.1	21798944
AT3G54190.1	Zm00001d027856_P001	AT1G14330.1	21798944
AT3G54190.1	Zm00001d033012_P001	AT1G14330.1	21798944
AT3G54190.1	Zm00001d048310_P001	AT1G14330.1	21798944
AT3G54190.1	Zm00001d048898_P001	AT1G14330.1	21798944
AT3G54190.1	Zm00001d052253_P001	AT1G14330.1	21798944
AT3G54190.1	Zm00001d023402_P001	AT1G25550.1	21798944
AT3G54190.1	Zm00001d023411_P001	AT1G25550.1	21798944
AT3G54190.1	Zm00001d023606_P005	AT1G34430.1	21798944
AT3G54190.1	Zm00001d041839_P001	AT1G34430.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES18406	Sorghum	plastid	94.1	94.52
Os05t0482600-01	Rice	plastid	89.74	90.33
TraesCS1B01G313700.1	Wheat	plastid	88.43	89.01
TraesCS1A01G303300.1	Wheat	mitochondrion, plastid	88.21	88.79
TraesCS1D01G302800.1	Wheat	mitochondrion, plastid	88.21	88.79
HORVU1Hr1G069210.3	Barley	nucleus, plastid	87.55	88.13
Zm00001d010625_P003	Maize	plastid	93.23	87.68
CDX78216	Canola	plastid	79.48	80.53
CDX73499	Canola	plastid	79.48	80.53
CDX76163	Canola	plastid	77.73	78.24
Solyc03g095260.2.1	Tomato	plastid	81.0	77.62
PGSC0003DMT400013483	Potato	plastid	80.79	77.41
AT3G54190.1	Thale cress	plastid	78.82	77.3
KRH53685	Soybean	nucleus, plastid	80.35	76.99
Bra007053.1-P	Field mustard	plastid	78.82	76.97
CDY13190	Canola	plastid	78.38	76.87
KRH64247	Soybean	nucleus, plastid	79.91	76.25
Solyc06g048480.2.1	Tomato	nucleus	79.91	76.25
Bra014834.1-P	Field mustard	plastid	78.17	76.01
VIT_08s0056g00230.t01	Wine grape	plastid	76.86	75.86
AT2G38630.1	Thale cress	plastid	77.29	75.8
KRH72561	Soybean	nucleus	79.04	75.42
KRH16944	Soybean	plastid	78.82	75.37
VIT_13s0067g00100.t01	Wine grape	plastid	75.33	70.84
KRH40628	Soybean	plastid	71.4	67.98
KRH00534	Soybean	plastid	70.96	67.85
KRH53714	Soybean	cytosol	36.9	65.5
Zm00001d023762_P001	Maize	mitochondrion	68.56	65.01
Zm00001d041759_P002	Maize	cytosol, mitochondrion	68.78	62.13
KRH40627	Soybean	extracellular, plasma membrane	31.66	55.13
Zm00001d018291_P002	Maize	cytosol, mitochondrion, nucleus, plastid	63.76	48.83

Protein Annotations

EMBL:BT062876	EnsemblPlants:Zm00001d038513_P002	EnsemblPlants:Zm00001d038513_T002	EnsemblPlantsGene:Zm00001d038513	Gene3D:2.130.10.10	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR015943	InterPro:WD40/YVTN_repeat-like_dom_sf	PANTHER:PTHR31789	ProteinID:AQK86791.1
SUPFAM:SSF69322	UniParc:UPI0001948D1A	UniProt:C0P3K7	MapMan:35.2	:	:

Description

Transducin/WD40 repeat-like superfamily protein

Coordinates

chr6:+:159016986..159021040

Molecular Weight (calculated)

52677.5 Da

IEP (calculated)

8.679

GRAVY (calculated)

-0.427

Length

458 amino acids

Sequence
(BLAST)

001: MEPRRISASP RPCSGRRVVA RKRPRQEAVV SSVRKLQRRE ISSRRDRTFT MSAAQERFRN IQLQEEFDTH DPKENASLLP YLRKRSKIIE IVAARDIVFA
101: LSQSGVCAAF SRETNRRICF LNGSPDEVIR SLFYNKNNDS LITVSVYGSE NFSALRCRTT RIEYVRRGQP DAGFPLFESE SLKWPGFVEF DDVNGRVLTY
201: SAQDSTYKVF DLKNYTLLYL VSDKNVQEIK ISPGIMLLIY ARTSSSVPLK ILSIDDGTVL KSFSHLLHRN KKVDFIEQFN EKLLVKQEGE NLQILDVRNF
301: QLTEVSRTEF MTPSAFIFLH ELQLFLTFRN RAVSVWNFRG ELVTSFEDHL LWHPDCNTNN IYITSDQDLI ISYCKADSTD STSEENAGSI NISSILSGKC
401: LAKINTGNSN ACKERKKAWK FRNTVSEALE DITALYYDED RDEIYTGNRH GLVHVWSS

Best Arabidopsis Sequence Match ( AT3G54190.1 )
(BLAST)

001: MEGRRITASP RPCSGRRIVA KKRSRPDGFV NSVKKLQRRE ISSRKDRAFS ISTAQERFRN MRLVEQYDTH DPKGHCLVAL PFLMKRTKVI EIVAARDIVF
101: ALAHSGVCAA FSRESNKRIC FLNVSPDEVI RSLFYNKNND SLITVSVYAS DNFSSLKCRS TRIEYILRGQ PDAGFALFES ESLKWPGFVE FDDVNGKVLT
201: YSAQDSVYKV FDLKNYTMLY SISDKNVQEI KISPGIMLLI FKRAASHVPL KILSIEDGTV LKSFNHLLHR NKKVDFIEQF NEKLLVKQEN ENLQILDVRN
301: AELMEVSRAE FMTPSAFIFL YENQLFLTFR NRNVSVWNFR GELVTSFEDH LLWHPDCNTN NIYITSDQDL IISYCKADTE DQWIEGNAGS INISNILTGK
401: CLAKITPSSG PPKDDESSSS NCMGKNSKQR RNAVAEALED ITALFYDEER NEIYTGNRHG LVHVWSN

Arabidopsis Description

AT3g54190/F24B22_150 [Source:UniProtKB/TrEMBL;Acc:Q9C5G8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.