CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH16944	Soybean	plastid	78.29	42.17
KRH72561	Soybean	nucleus	77.13	41.46
KRH53685	Soybean	nucleus, plastid	76.36	41.21
KRH64247	Soybean	nucleus, plastid	75.97	40.83
PGSC0003DMT400013483	Potato	plastid	74.81	40.38
Solyc03g095260.2.1	Tomato	plastid	74.42	40.17
Os05t0482600-01	Rice	plastid	69.77	39.56
Solyc06g048480.2.1	Tomato	nucleus	72.48	38.96
EES18406	Sorghum	plastid	67.05	37.94
VIT_13s0067g00100.t01	Wine grape	plastid	70.54	37.37
Zm00001d038513_P002	Maize	plastid	65.5	36.9
TraesCS1A01G303300.1	Wheat	mitochondrion, plastid	64.73	36.7
TraesCS1D01G302800.1	Wheat	mitochondrion, plastid	64.73	36.7
TraesCS1B01G313700.1	Wheat	plastid	64.34	36.48
HORVU1Hr1G069210.3	Barley	nucleus, plastid	63.95	36.26
Zm00001d010625_P003	Maize	plastid	65.89	34.91
Os01t0817800-01	Rice	plastid	61.24	34.8
HORVU3Hr1G080560.3	Barley	nucleus, plastid	59.69	34.3
TraesCS3A01G341100.1	Wheat	nucleus, plastid	59.3	34.08
TraesCS3D01G334700.1	Wheat	nucleus, plastid	59.3	34.08
KRH40628	Soybean	plastid	63.18	33.89
KRH00534	Soybean	plastid	62.02	33.4
TraesCS3B01G373200.1	Wheat	nucleus	50.0	28.67
KRH40627	Soybean	extracellular, plasma membrane	22.87	22.43

Protein Annotations

EMBL:ACUP02003480	EnsemblPlants:KRH53714	EnsemblPlantsGene:GLYMA_06G141800	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:Quinoprotein_ADH-like_supfam	PANTHER:PTHR31789	ProteinID:KRH53714	ProteinID:KRH53714.1	SUPFAM:SSF50998	UniParc:UPI0002957F2C
UniProt:K7KV09	MapMan:35.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:11550374..11553046

Molecular Weight (calculated)

29415.3 Da

IEP (calculated)

8.468

GRAVY (calculated)

-0.282

Length

258 amino acids

Sequence
(BLAST)

001: MSDAQERFRN IRLREEYDMH DRKDPLSVVL LFLRKRSKII EILAAQEIVL ALDNRTNQRI CFLNVSPDEV IRSMFHNENN VSFIIVSVYA SDGYSSLKCR
101: STSIEYIRRG KLDPGFAIFE SESLKWPGFV EFNDINGKTL TYSAQDSPGI MLIFAKASSH VPLKILSIED GTVLKSFNLL LHENKKERTF ELTEVSRTGS
201: INVSNILTGK CLAKIKASDG FPGDALFCDE ERNEVYTVNR NGLVHVWSKC TPNKRQKI

Best Arabidopsis Sequence Match ( AT2G38630.1 )
(BLAST)

001: MMEGRRIIAN PRPCSGSRRV IAKKRSRPDG FVNSVKKLQR REISSRMDRA FSISTAQERF RNMRLVEQYD THDPKGYCLV SLPNLLKRSK VIEIVAARDI
101: VFALTLSGVC ASFSRETNKK VCFLNVSPDE VIRSLFYNKN NDSLITVSVY ASDNYSSLKC RSTRIEYILR GQADAGFPLF ESESLKWPGF VEFDDVNGKV
201: LTYSAQDSVY KVFDLKNYAL LYSISDKNVQ EIKISPGIML LIFKRAASHV PLKILSIEDG TLLKSFHHLL HRNKKVDFIE QFNEKLLVKQ ENENLQILDV
301: RNAELIEVSR TDFMTPSAFI FLYENQLFLT FRNRNVSVWN FRGELVTSFE DHLLWHPDCN TNNIYITSDQ DLIISYCKAD TEDQWIEGNA GSINISNILT
401: GKCLAKIKAN NGPPKEEDCS SSDLGNSSRR RSAVAEALED ITALFYDEER NEIYTGNRHG LLHVWSN

Arabidopsis Description

Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q84J57]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.