CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
cytosol 1
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91819
KRG92028
KRG99114
KRH34759
KRH34962
KRH45883
KRH70595
KRH70694
KRH74828
KRH75476

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54190.1	KRG99114	AT1G14330.1	21798944
AT3G54190.1	KRH45883	AT1G14330.1	21798944
AT3G54190.1	KRH70694	AT1G14330.1	21798944
AT3G54190.1	KRH74828	AT1G14330.1	21798944
AT3G54190.1	KRG92028	AT1G25550.1	21798944
AT3G54190.1	KRH34759	AT1G25550.1	21798944
AT3G54190.1	KRH70595	AT1G25550.1	21798944
AT3G54190.1	KRH75476	AT1G25550.1	21798944
AT3G54190.1	KRG91819	AT1G34430.1	21798944
AT3G54190.1	KRH34962	AT1G34430.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH00534	Soybean	plastid	90.02	90.4
CDX78216	Canola	plastid	73.6	78.32
CDX73499	Canola	plastid	73.39	78.1
Bra007053.1-P	Field mustard	plastid	75.26	77.19
AT3G54190.1	Thale cress	plastid	74.64	76.87
CDY13190	Canola	plastid	74.43	76.66
CDX76163	Canola	plastid	72.35	76.48
VIT_08s0056g00230.t01	Wine grape	plastid	73.39	76.08
Bra014834.1-P	Field mustard	plastid	74.22	75.8
AT2G38630.1	Thale cress	plastid	72.14	74.3
Os05t0482600-01	Rice	plastid	69.65	73.63
KRH72561	Soybean	nucleus	73.18	73.33
EES18406	Sorghum	plastid	69.44	73.25
KRH16944	Soybean	plastid	72.77	73.07
KRH53685	Soybean	nucleus, plastid	72.56	73.01
KRH64247	Soybean	nucleus, plastid	71.93	72.08
Zm00001d038513_P002	Maize	plastid	67.98	71.4
TraesCS1A01G303300.1	Wheat	mitochondrion, plastid	67.36	71.21
TraesCS1D01G302800.1	Wheat	mitochondrion, plastid	67.36	71.21
TraesCS1B01G313700.1	Wheat	plastid	67.15	70.99
HORVU1Hr1G069210.3	Barley	nucleus, plastid	66.94	70.77
Os01t0817800-01	Rice	plastid	65.7	69.6
Zm00001d010625_P003	Maize	plastid	69.44	68.58
HORVU3Hr1G080560.3	Barley	nucleus, plastid	63.2	67.71
TraesCS3A01G341100.1	Wheat	nucleus, plastid	63.2	67.71
TraesCS3D01G334700.1	Wheat	nucleus, plastid	63.2	67.71
KRH40627	Soybean	extracellular, plasma membrane	36.38	66.54
KRH53714	Soybean	cytosol	33.89	63.18
TraesCS3B01G373200.1	Wheat	nucleus	56.76	60.67

Protein Annotations

EMBL:ACUP02006044	EnsemblPlants:KRH40628	EnsemblPlantsGene:GLYMA_09G270700	EntrezGene:100806051	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	PANTHER:PTHR31789	ProteinID:KRH40628	ProteinID:KRH40628.1	SEG:seg	SUPFAM:SSF69322
UniParc:UPI00023C88C4	UniProt:I1L6W1	MapMan:35.2	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:48758398..48762909

Molecular Weight (calculated)

54974.5 Da

IEP (calculated)

8.514

GRAVY (calculated)

-0.353

Length

481 amino acids

Sequence
(BLAST)

001: MEGRMRGGYS GRRIVASRRG SGKGNVNIII NNNNNNNNKN NTNVIKKLQS REICSKPHRA FASVTASHRF RSMRLTHQYD THDPSKTRSS LWPFLMKRTK
101: VVEIVAAKNV VFALYHSGLC AAFSRETDER ICFLNVCPDE VIRSLFYNKN NDSLITVSVY ASENFCSLKC RSTKIEYIRR GKPDAGFPLF QSESLKWPGF
201: VEFDDVNGKV LTYSAQDCIY KVFDLKNYTL LYSISDRNVQ EIKISPGIML LIYNRTSGHI PLKIISIEDG TILKVFNHLL HRNKKVDFIE QFNEKLLVKQ
301: ENENLQILDV RSSELMEVSR LEFMTPSAFI FLYENQLFLS FRNRTVSVWN FRGELVTSFE DHQLWHPDCN TNNIYITSDQ DLIISYCKAD SDDQWIEGTA
401: GSINVSNILT GKCVAKITAI SSSAKADECR SSGCSCKKSH SCLMRSPVAE ALEDITALFY DEDRNEIYTG NRHGLVHVWS N

Best Arabidopsis Sequence Match ( AT2G38630.1 )
(BLAST)

001: MMEGRRIIAN PRPCSGSRRV IAKKRSRPDG FVNSVKKLQR REISSRMDRA FSISTAQERF RNMRLVEQYD THDPKGYCLV SLPNLLKRSK VIEIVAARDI
101: VFALTLSGVC ASFSRETNKK VCFLNVSPDE VIRSLFYNKN NDSLITVSVY ASDNYSSLKC RSTRIEYILR GQADAGFPLF ESESLKWPGF VEFDDVNGKV
201: LTYSAQDSVY KVFDLKNYAL LYSISDKNVQ EIKISPGIML LIFKRAASHV PLKILSIEDG TLLKSFHHLL HRNKKVDFIE QFNEKLLVKQ ENENLQILDV
301: RNAELIEVSR TDFMTPSAFI FLYENQLFLT FRNRNVSVWN FRGELVTSFE DHLLWHPDCN TNNIYITSDQ DLIISYCKAD TEDQWIEGNA GSINISNILT
401: GKCLAKIKAN NGPPKEEDCS SSDLGNSSRR RSAVAEALED ITALFYDEER NEIYTGNRHG LLHVWSN

Arabidopsis Description

Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q84J57]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.