Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 3
- nucleus 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G334700.1 | Wheat | nucleus, plastid | 86.22 | 86.41 |
| TraesCS3A01G341100.1 | Wheat | nucleus, plastid | 86.0 | 86.19 |
| HORVU3Hr1G080560.3 | Barley | nucleus, plastid | 85.33 | 85.52 |
| Os01t0817800-01 | Rice | plastid | 76.67 | 75.99 |
| TraesCS1B01G313700.1 | Wheat | plastid | 70.44 | 69.67 |
| CDX73499 | Canola | plastid | 64.89 | 64.6 |
| CDX78216 | Canola | plastid | 64.89 | 64.6 |
| CDX76163 | Canola | plastid | 64.89 | 64.18 |
| PGSC0003DMT400013483 | Potato | plastid | 67.78 | 63.81 |
| Solyc03g095260.2.1 | Tomato | plastid | 67.56 | 63.6 |
| KRH53685 | Soybean | nucleus, plastid | 66.89 | 62.97 |
| Solyc06g048480.2.1 | Tomato | nucleus | 67.11 | 62.92 |
| CDY13190 | Canola | plastid | 65.11 | 62.74 |
| AT3G54190.1 | Thale cress | plastid | 65.11 | 62.74 |
| Bra014834.1-P | Field mustard | plastid | 65.11 | 62.21 |
| KRH64247 | Soybean | nucleus, plastid | 66.22 | 62.08 |
| KRH72561 | Soybean | nucleus | 66.22 | 62.08 |
| Bra007053.1-P | Field mustard | plastid | 64.67 | 62.05 |
| VIT_13s0067g00100.t01 | Wine grape | plastid | 67.11 | 62.01 |
| AT2G38630.1 | Thale cress | plastid | 64.0 | 61.67 |
| KRH16944 | Soybean | plastid | 65.56 | 61.59 |
| VIT_08s0056g00230.t01 | Wine grape | plastid | 63.33 | 61.42 |
| TraesCS5B01G109800.2 | Wheat | nucleus | 61.33 | 57.26 |
| KRH40628 | Soybean | plastid | 60.67 | 56.76 |
| KRH00534 | Soybean | plastid | 59.11 | 55.53 |
| TraesCS6B01G371900.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 56.89 | 52.46 |
| KRH53714 | Soybean | cytosol | 28.67 | 50.0 |
| KRH40627 | Soybean | extracellular, plasma membrane | 24.22 | 41.44 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G373200.1 | EnsemblPlantsGene:TraesCS3B01G373200 | PANTHER:PTHR31789 | PANTHER:PTHR31789:SF4 | SEG:seg | SUPFAM:SSF69322 |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr3B:-:586152354..586157714
Molecular Weight (calculated)
51874.7 Da
IEP (calculated)
9.542
GRAVY (calculated)
-0.548
Length
450 amino acids
Sequence
(BLAST)
(BLAST)
001: MEARPRPSGV RRVTAKKRPR PDASSNSARK LQRREIAAFP ERTFAASTTR ERFRNIQLQE EFDTYDPKEN SSLLPYLRKR SEIIEIVGAR DIIFALSQLG
101: VCAAFSRVKN QRICFLNGSP DEVIRSLFYN KNNDSLITVS VYGSENFSAL RCRTTRIEYI RRGKPDAGFP LFETESLRWP GFVEFDDVNG KVLTYSAQDS
201: TYKVFDLKNY TLLYTISDKD VQEIKISPGI MLLIYSRKKG YIPLEILSIE DGKRLKSFRH LLHRNKKIDF IEQFNEKLLV KQDGENLQIL DVTNSKITEV
301: SSNEFVTPSA FIFLYEMQLF LTFRNRSVSV WNFRGELVTS FEDHLLWHPD CNTNSIYITS NQDLIISYCK AEPDDPSSED NDKGREPVQT EVVEVPVYAS
401: GGPRRHHISV LRRRARGDHH RQPSRPHPCV VKLTAWSSAG RLHQAPGDPR
101: VCAAFSRVKN QRICFLNGSP DEVIRSLFYN KNNDSLITVS VYGSENFSAL RCRTTRIEYI RRGKPDAGFP LFETESLRWP GFVEFDDVNG KVLTYSAQDS
201: TYKVFDLKNY TLLYTISDKD VQEIKISPGI MLLIYSRKKG YIPLEILSIE DGKRLKSFRH LLHRNKKIDF IEQFNEKLLV KQDGENLQIL DVTNSKITEV
301: SSNEFVTPSA FIFLYEMQLF LTFRNRSVSV WNFRGELVTS FEDHLLWHPD CNTNSIYITS NQDLIISYCK AEPDDPSSED NDKGREPVQT EVVEVPVYAS
401: GGPRRHHISV LRRRARGDHH RQPSRPHPCV VKLTAWSSAG RLHQAPGDPR
001: MMEGRRIIAN PRPCSGSRRV IAKKRSRPDG FVNSVKKLQR REISSRMDRA FSISTAQERF RNMRLVEQYD THDPKGYCLV SLPNLLKRSK VIEIVAARDI
101: VFALTLSGVC ASFSRETNKK VCFLNVSPDE VIRSLFYNKN NDSLITVSVY ASDNYSSLKC RSTRIEYILR GQADAGFPLF ESESLKWPGF VEFDDVNGKV
201: LTYSAQDSVY KVFDLKNYAL LYSISDKNVQ EIKISPGIML LIFKRAASHV PLKILSIEDG TLLKSFHHLL HRNKKVDFIE QFNEKLLVKQ ENENLQILDV
301: RNAELIEVSR TDFMTPSAFI FLYENQLFLT FRNRNVSVWN FRGELVTSFE DHLLWHPDCN TNNIYITSDQ DLIISYCKAD TEDQWIEGNG K
101: VFALTLSGVC ASFSRETNKK VCFLNVSPDE VIRSLFYNKN NDSLITVSVY ASDNYSSLKC RSTRIEYILR GQADAGFPLF ESESLKWPGF VEFDDVNGKV
201: LTYSAQDSVY KVFDLKNYAL LYSISDKNVQ EIKISPGIML LIFKRAASHV PLKILSIEDG TLLKSFHHLL HRNKKVDFIE QFNEKLLVKQ ENENLQILDV
301: RNAELIEVSR TDFMTPSAFI FLYENQLFLT FRNRNVSVWN FRGELVTSFE DHLLWHPDCN TNNIYITSDQ DLIISYCKAD TEDQWIEGNG K
Arabidopsis Description
Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q84J57]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.