CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
mitochondrion 2
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH16944	Soybean	plastid	97.5	97.7
KRH64247	Soybean	nucleus, plastid	91.25	91.25
KRH53685	Soybean	nucleus, plastid	90.42	90.8
Solyc03g095260.2.1	Tomato	plastid	88.54	88.91
PGSC0003DMT400013483	Potato	plastid	88.54	88.91
Solyc06g048480.2.1	Tomato	nucleus	86.67	86.67
Os05t0482600-01	Rice	plastid	79.58	83.96
EES18406	Sorghum	plastid	78.12	82.24
VIT_13s0067g00100.t01	Wine grape	plastid	82.5	81.31
TraesCS1D01G302800.1	Wheat	mitochondrion, plastid	75.42	79.56
TraesCS1A01G303300.1	Wheat	mitochondrion, plastid	75.42	79.56
Zm00001d038513_P002	Maize	plastid	75.42	79.04
HORVU1Hr1G069210.3	Barley	nucleus, plastid	74.58	78.68
TraesCS1B01G313700.1	Wheat	plastid	74.38	78.46
KRH53714	Soybean	cytosol	41.46	77.13
Zm00001d010625_P003	Maize	plastid	77.08	75.98
Os01t0817800-01	Rice	plastid	70.62	74.67
TraesCS3D01G334700.1	Wheat	nucleus, plastid	68.96	73.72
TraesCS3A01G341100.1	Wheat	nucleus, plastid	68.75	73.5
HORVU3Hr1G080560.3	Barley	nucleus, plastid	68.54	73.27
KRH40628	Soybean	plastid	73.33	73.18
KRH00534	Soybean	plastid	72.71	72.86
TraesCS3B01G373200.1	Wheat	nucleus	62.08	66.22
KRH40627	Soybean	extracellular, plasma membrane	33.33	60.84

Protein Annotations

EMBL:ACUP02001221	EnsemblPlants:KRH72561	EnsemblPlantsGene:GLYMA_02G220400	EntrezGene:100777719	Gene3D:2.130.10.10	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR015943	InterPro:WD40/YVTN_repeat-like_dom_sf	PANTHER:PTHR31789	ProteinID:KRH72561
ProteinID:KRH72561.1	SEG:seg	SUPFAM:SSF69322	UniParc:UPI00023BD38B	UniProt:I1JH63	MapMan:35.2

Description

hypothetical protein

Coordinates

chr2:+:40822095..40826236

Molecular Weight (calculated)

54661.0 Da

IEP (calculated)

8.278

GRAVY (calculated)

-0.359

Length

480 amino acids

Sequence
(BLAST)

001: MEGGGRRITV SPRPCCGRRV VAKKRPRLVD GFVNSVKKLQ RREISSNRDR AFSMTDAQER FRNIRLQEEY DTHDPKGPSS AVLQFLRKRS KIIEIVAARD
101: IVFALAQSGV CAAFSRETNE RICFLNVSPD EVIRSLFYNK NNDSLITVSV YASDNYSSLK CRSTRIEYIR RVKPDAGFAL FESESLKWPG FVEFDDVNGK
201: VLTYSAQDSI YKVFDLKNYS MLYSISDKNV QEIKISPGIM LLIFTKSSSH VPLKILSIED GTVLKSFNHL LHRNKKVDFI EQFNEKLLVK QENENLQILD
301: VRTSELTEVS RSEFMTPSAF IFLYENQLFL TFRNRTVAVW NFRGELVTSF EDHLLWHPDC NTNNIYITSD QDLIISYCKA DSDDSLSEGN AGSINVSNIL
401: TGKCLAKIRA SNGLPMVKEC SCSDDNCSSS ACNSGKRKRS SRIRSTVAEA LEDITALFYD EERNEIYTGN RLGLVHVWSN

Best Arabidopsis Sequence Match ( AT3G54190.1 )
(BLAST)

001: MEGRRITASP RPCSGRRIVA KKRSRPDGFV NSVKKLQRRE ISSRKDRAFS ISTAQERFRN MRLVEQYDTH DPKGHCLVAL PFLMKRTKVI EIVAARDIVF
101: ALAHSGVCAA FSRESNKRIC FLNVSPDEVI RSLFYNKNND SLITVSVYAS DNFSSLKCRS TRIEYILRGQ PDAGFALFES ESLKWPGFVE FDDVNGKVLT
201: YSAQDSVYKV FDLKNYTMLY SISDKNVQEI KISPGIMLLI FKRAASHVPL KILSIEDGTV LKSFNHLLHR NKKVDFIEQF NEKLLVKQEN ENLQILDVRN
301: AELMEVSRAE FMTPSAFIFL YENQLFLTFR NRNVSVWNFR GELVTSFEDH LLWHPDCNTN NIYITSDQDL IISYCKADTE DQWIEGNAGS INISNILTGK
401: CLAKITPSSG PPKDDESSSS NCMGKNSKQR RNAVAEALED ITALFYDEER NEIYTGNRHG LVHVWSN

Arabidopsis Description

AT3g54190/F24B22_150 [Source:UniProtKB/TrEMBL;Acc:Q9C5G8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.