CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular

Predictor Summary:

plastid 2
mitochondrion 1
extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 4
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91819
KRG92028
KRG99114
KRH34759
KRH34962
KRH45883
KRH70595
KRH70694
KRH74828
KRH75476

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54190.1	KRG99114	AT1G14330.1	21798944
AT3G54190.1	KRH45883	AT1G14330.1	21798944
AT3G54190.1	KRH70694	AT1G14330.1	21798944
AT3G54190.1	KRH74828	AT1G14330.1	21798944
AT3G54190.1	KRG92028	AT1G25550.1	21798944
AT3G54190.1	KRH34759	AT1G25550.1	21798944
AT3G54190.1	KRH70595	AT1G25550.1	21798944
AT3G54190.1	KRH75476	AT1G25550.1	21798944
AT3G54190.1	KRG91819	AT1G34430.1	21798944
AT3G54190.1	KRH34962	AT1G34430.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH00534	Soybean	plastid	66.54	36.53
KRH40628	Soybean	plastid	66.54	36.38
CDX78216	Canola	plastid	57.79	33.63
VIT_08s0056g00230.t01	Wine grape	plastid	59.32	33.62
KRH16944	Soybean	plastid	61.22	33.61
Bra007053.1-P	Field mustard	plastid	59.7	33.48
CDX73499	Canola	plastid	57.41	33.41
AT3G54190.1	Thale cress	plastid	59.32	33.4
AT2G38630.1	Thale cress	plastid	59.32	33.4
KRH72561	Soybean	nucleus	60.84	33.33
CDY13190	Canola	plastid	58.94	33.19
EES18406	Sorghum	plastid	56.65	32.68
KRH53685	Soybean	nucleus, plastid	59.32	32.64
KRH64247	Soybean	nucleus, plastid	59.32	32.5
Bra014834.1-P	Field mustard	plastid	58.17	32.48
CDX76163	Canola	plastid	55.89	32.31
Os05t0482600-01	Rice	plastid	55.89	32.31
Zm00001d038513_P002	Maize	plastid	55.13	31.66
TraesCS1A01G303300.1	Wheat	mitochondrion, plastid	54.75	31.65
TraesCS1D01G302800.1	Wheat	mitochondrion, plastid	54.75	31.65
HORVU1Hr1G069210.3	Barley	nucleus, plastid	53.99	31.21
TraesCS1B01G313700.1	Wheat	plastid	53.99	31.21
Zm00001d010625_P003	Maize	plastid	56.65	30.6
Os01t0817800-01	Rice	plastid	52.09	30.18
HORVU3Hr1G080560.3	Barley	nucleus, plastid	51.33	30.07
TraesCS3A01G341100.1	Wheat	nucleus, plastid	50.95	29.84
TraesCS3D01G334700.1	Wheat	nucleus, plastid	50.95	29.84
TraesCS3B01G373200.1	Wheat	nucleus	41.44	24.22
KRH53714	Soybean	cytosol	22.43	22.87

Protein Annotations

EMBL:ACUP02006044	EnsemblPlants:KRH40627	EnsemblPlantsGene:GLYMA_09G270600	EntrezGene:100805521	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	PANTHER:PTHR31789	ProteinID:KRH40627	ProteinID:KRH40627.1	SEG:seg	TMHMM:TMhelix
UniParc:UPI0006ED8A28	UniProt:A0A0R0IJU0	MapMan:35.2	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:48752696..48754081

Molecular Weight (calculated)

30248.1 Da

IEP (calculated)

5.072

GRAVY (calculated)

0.076

Length

263 amino acids

Sequence
(BLAST)

001: MVFLKVISIS SLGWFSFLSR ISSYTSLYFD QLLLLLLYIF LLILFLLYAY YLMFCYSSSI MLLIFNRISG HIPLKITSIE NGTVLKTFKH LLHQNKQVDF
101: IELFHEKLLV KQENENQLFL TFINGTVSVW SFCGELVTQF EDHQLWHPDC YTNNTYITKD QDLIISYCKA DSDDQWMEGN AGSINVSDIL TGKCVAKLNA
201: TSSSIKADEC NNSACNCNKQ SHSCLLRSSV AEALEEVTAL FYDEDRNEIY AGNRHDLDHV WSN

Best Arabidopsis Sequence Match ( AT2G38630.1 )
(BLAST)

001: MMEGRRIIAN PRPCSGSRRV IAKKRSRPDG FVNSVKKLQR REISSRMDRA FSISTAQERF RNMRLVEQYD THDPKGYCLV SLPNLLKRSK VIEIVAARDI
101: VFALTLSGVC ASFSRETNKK VCFLNVSPDE VIRSLFYNKN NDSLITVSVY ASDNYSSLKC RSTRIEYILR GQADAGFPLF ESESLKWPGF VEFDDVNGKV
201: LTYSAQDSVY KVFDLKNYAL LYSISDKNVQ EIKISPGIML LIFKRAASHV PLKILSIEDG TLLKSFHHLL HRNKKVDFIE QFNEKLLVKQ ENENLQILDV
301: RNAELIEVSR TDFMTPSAFI FLYENQLFLT FRNRNVSVWN FRGELVTSFE DHLLWHPDCN TNNIYITSDQ DLIISYCKAD TEDQWIEGNA GSINISNILT
401: GKCLAKIKAN NGPPKEEDCS SSDLGNSSRR RSAVAEALED ITALFYDEER NEIYTGNRHG LLHVWSN

Arabidopsis Description

Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q84J57]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.