CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES15678
KXG30756
KXG40080
OQU78843
OQU83795
OQU91835

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54190.1	KXG30756	AT1G14330.1	21798944
AT3G54190.1	KXG40080	AT1G14330.1	21798944
AT3G54190.1	OQU83795	AT1G14330.1	21798944
AT3G54190.1	OQU91835	AT1G14330.1	21798944
AT3G54190.1	EES15678	AT1G25550.1	21798944
AT3G54190.1	OQU78843	AT1G34430.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038513_P002	Maize	plastid	94.52	94.1
Os05t0482600-01	Rice	plastid	93.64	93.85
TraesCS1D01G302800.1	Wheat	mitochondrion, plastid	91.89	92.09
TraesCS1A01G303300.1	Wheat	mitochondrion, plastid	91.89	92.09
TraesCS1B01G313700.1	Wheat	plastid	90.79	90.99
Zm00001d010625_P003	Maize	plastid	97.15	90.97
HORVU1Hr1G069210.3	Barley	nucleus, plastid	90.35	90.55
CDX73499	Canola	plastid	81.36	82.08
CDX78216	Canola	plastid	81.36	82.08
CDX76163	Canola	plastid	79.82	80.0
PGSC0003DMT400013483	Potato	plastid	83.55	79.71
Solyc03g095260.2.1	Tomato	plastid	83.33	79.5
AT3G54190.1	Thale cress	plastid	81.36	79.44
KRH53685	Soybean	nucleus, plastid	82.68	78.87
CDY13190	Canola	plastid	80.48	78.59
Bra007053.1-P	Field mustard	plastid	80.7	78.46
KRH64247	Soybean	nucleus, plastid	82.24	78.12
KRH72561	Soybean	nucleus	82.24	78.12
Solyc06g048480.2.1	Tomato	nucleus	82.02	77.92
KRH16944	Soybean	plastid	81.8	77.87
AT2G38630.1	Thale cress	plastid	79.61	77.73
Bra014834.1-P	Field mustard	plastid	80.26	77.71
VIT_08s0056g00230.t01	Wine grape	plastid	78.95	77.59
VIT_13s0067g00100.t01	Wine grape	plastid	78.51	73.51
KRH00534	Soybean	plastid	73.03	69.52
KRH40628	Soybean	plastid	73.25	69.44
EES16005	Sorghum	mitochondrion, nucleus	71.49	67.49
KRH53714	Soybean	cytosol	37.94	67.05
EES07638	Sorghum	mitochondrion	67.54	62.99
OQU79156	Sorghum	cytosol	21.05	58.18
KRH40627	Soybean	extracellular, plasma membrane	32.68	56.65
OQU76005	Sorghum	nucleus	12.06	29.26

Protein Annotations

EnsemblPlants:EES18406	EnsemblPlantsGene:SORBI_3009G176700	EntrezGene:8077017	Gene3D:2.130.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR015943	InterPro:WD40/YVTN_repeat-like_dom_sf	PANTHER:PTHR31789	ProteinID:EES18406	ProteinID:EES18406.1
RefSeq:XP_002439976.1	SUPFAM:SSF69322	unigene:Sbi.8128	UniParc:UPI0001A889E8	UniProt:C5YZV4	MapMan:35.2

Description

hypothetical protein

Coordinates

chr9:+:53159129..53163452

Molecular Weight (calculated)

52385.0 Da

IEP (calculated)

8.437

GRAVY (calculated)

-0.427

Length

456 amino acids

Sequence
(BLAST)

001: MEPRRISASP RPCSGRRVVA ARKRPRQEAV VSSVRKLQRR EISSRRDRAF AMSAAQERFR NIQLQEEFDT HDPKENTSLL PYLRKRSKII EIVAARDIVF
101: ALSQSGVCAA FSRETNQRIC FLNGSPDEVI RSLFYNKNND SLITVSVYGS ENFSALRCRT TRIEYIRRGQ PDAGFPLFES ESLKWPGFVE FDDVNGKVLT
201: YSAQDSTYKV FDLKNYTLLY SVSDKNVQEI KISPGIMLLI YTRTSSSVPL KILSIEDGTV LKSFSHLLHR NKKVDFIEQF NEKLLVKQEG ENLQILDVRN
301: FQLTEVSRTE FMTPSAFIFL YELQLFLTFR NRSVAVWNFR GELVTSFEDH LLWHPDCNTN NIYITSDQDL IISYCKADST DSSSEENAGS INISSILTGK
401: CLAKINPGNS SKQKKAWRFQ NTVSEALEDI TALYYDEDRD EIYTGNRHGL VHVWSN

Best Arabidopsis Sequence Match ( AT3G54190.1 )
(BLAST)

001: MEGRRITASP RPCSGRRIVA KKRSRPDGFV NSVKKLQRRE ISSRKDRAFS ISTAQERFRN MRLVEQYDTH DPKGHCLVAL PFLMKRTKVI EIVAARDIVF
101: ALAHSGVCAA FSRESNKRIC FLNVSPDEVI RSLFYNKNND SLITVSVYAS DNFSSLKCRS TRIEYILRGQ PDAGFALFES ESLKWPGFVE FDDVNGKVLT
201: YSAQDSVYKV FDLKNYTMLY SISDKNVQEI KISPGIMLLI FKRAASHVPL KILSIEDGTV LKSFNHLLHR NKKVDFIEQF NEKLLVKQEN ENLQILDVRN
301: AELMEVSRAE FMTPSAFIFL YENQLFLTFR NRNVSVWNFR GELVTSFEDH LLWHPDCNTN NIYITSDQDL IISYCKADTE DQWIEGNAGS INISNILTGK
401: CLAKITPSSG PPKDDESSSS NCMGKNSKQR RNAVAEALED ITALFYDEER NEIYTGNRHG LVHVWSN

Arabidopsis Description

AT3g54190/F24B22_150 [Source:UniProtKB/TrEMBL;Acc:Q9C5G8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.