Factsheet for Bra007053.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra012471.1-P
Bra026838.1-P
Bra028057.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54190.1	Bra026838.1-P	AT1G14330.1	21798944
AT3G54190.1	Bra012471.1-P	AT1G25550.1	21798944
AT3G54190.1	Bra028057.1-P	AT1G34430.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78216	Canola	plastid	95.1	98.67
CDX73499	Canola	plastid	94.88	98.45
Bra014834.1-P	Field mustard	plastid	97.01	96.6
AT3G54190.1	Thale cress	plastid	95.1	95.5
VIT_08s0056g00230.t01	Wine grape	plastid	85.5	86.42
Os05t0482600-01	Rice	plastid	78.46	80.88
EES18406	Sorghum	plastid	78.46	80.7
Zm00001d038513_P002	Maize	plastid	76.97	78.82
TraesCS1A01G303300.1	Wheat	mitochondrion, plastid	75.05	77.36
TraesCS1D01G302800.1	Wheat	mitochondrion, plastid	75.05	77.36
TraesCS1B01G313700.1	Wheat	plastid	74.63	76.92
HORVU1Hr1G069210.3	Barley	nucleus, plastid	74.2	76.48
Zm00001d010625_P003	Maize	plastid	78.25	75.36
KRH40628	Soybean	plastid	77.19	75.26
KRH00534	Soybean	plastid	76.33	74.74
Os01t0817800-01	Rice	plastid	71.22	73.57
TraesCS3D01G334700.1	Wheat	nucleus, plastid	68.87	71.94
TraesCS3A01G341100.1	Wheat	nucleus, plastid	68.66	71.71
HORVU3Hr1G080560.3	Barley	nucleus, plastid	68.44	71.49
TraesCS3B01G373200.1	Wheat	nucleus	62.05	64.67
KRH40627	Soybean	extracellular, plasma membrane	33.48	59.7

Protein Annotations

EnsemblPlants:Bra007053.1	EnsemblPlants:Bra007053.1-P	EnsemblPlantsGene:Bra007053	PANTHER:PTHR31789	SEG:seg	SUPFAM:SSF69322
UniParc:UPI00025428A6	UniProt:M4CS61	MapMan:35.2	:	:	:

Description

AT3G54190 (E=3e-250) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G38630.1); Has 77 Blast hits to 77 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 51; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).

Coordinates

chrA09:-:27057033..27059072

Molecular Weight (calculated)

53622.7 Da

IEP (calculated)

8.618

GRAVY (calculated)

-0.369

Length

469 amino acids

Sequence
(BLAST)

001: MEGRRITASP RPCSGRRVVA KKRTRPDGFV NSVKKLQRRE ISSRKDRAFS ISTAQERFRN MRLVEQYDTH DPKGHSLVAL PFLMKRTKVI EIVAARDIVF
101: ALAHSGVCAA FSRETNRRIC FLNVSPDEVI RSLFYNKNND SLITVSVYAS DNFSSLKCRS TRIEYILRGQ PDAGFALFES ESLKWPGFVE FDDVNGKVLT
201: YSAQDSVYKV FDLKNYTMLY SISDKHVQEI KISPGIMLLI FKRATSHVPL KILSIEDGTV LKSFNHLLHR NKKVDFIEQF NEKLLVKQEN ENLQILDVRN
301: AQLMEVSRAE FMTPSAFIFL YENQLFLTFR NRNVSVWNFR GELVTSFEDH LLWHPDCNTN NIYITSDQDL IISYCKADTE DQWIEGNAGS INISNILTGK
401: CLAKITSSSG PPKEDESSSS SSSSLGNNSK LRRNAVAEAL EDITALFYDE ERNEIYTGNR HGFVHVWSN

Best Arabidopsis Sequence Match ( AT3G54190.1 )
(BLAST)

001: MEGRRITASP RPCSGRRIVA KKRSRPDGFV NSVKKLQRRE ISSRKDRAFS ISTAQERFRN MRLVEQYDTH DPKGHCLVAL PFLMKRTKVI EIVAARDIVF
101: ALAHSGVCAA FSRESNKRIC FLNVSPDEVI RSLFYNKNND SLITVSVYAS DNFSSLKCRS TRIEYILRGQ PDAGFALFES ESLKWPGFVE FDDVNGKVLT
201: YSAQDSVYKV FDLKNYTMLY SISDKNVQEI KISPGIMLLI FKRAASHVPL KILSIEDGTV LKSFNHLLHR NKKVDFIEQF NEKLLVKQEN ENLQILDVRN
301: AELMEVSRAE FMTPSAFIFL YENQLFLTFR NRNVSVWNFR GELVTSFEDH LLWHPDCNTN NIYITSDQDL IISYCKADTE DQWIEGNAGS INISNILTGK
401: CLAKITPSSG PPKDDESSSS NCMGKNSKQR RNAVAEALED ITALFYDEER NEIYTGNRHG LVHVWSN

Arabidopsis Description

AT3g54190/F24B22_150 [Source:UniProtKB/TrEMBL;Acc:Q9C5G8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.