Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- cytosol 1
- nucleus 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os02t0325600-01 | |
| Os02t0748300-01 | |
| Os03t0171600-01 | |
| Os11t0602800-01 | |
| Os12t0182200-01 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES18406 | Sorghum | plastid | 93.85 | 93.64 |
| TraesCS1A01G303300.1 | Wheat | mitochondrion, plastid | 91.21 | 91.21 |
| TraesCS1D01G302800.1 | Wheat | mitochondrion, plastid | 91.21 | 91.21 |
| TraesCS1B01G313700.1 | Wheat | plastid | 90.11 | 90.11 |
| Zm00001d038513_P002 | Maize | plastid | 90.33 | 89.74 |
| HORVU1Hr1G069210.3 | Barley | nucleus, plastid | 89.67 | 89.67 |
| Zm00001d010625_P003 | Maize | plastid | 92.31 | 86.24 |
| Os01t0817800-01 | Rice | plastid | 83.52 | 83.7 |
| CDX78216 | Canola | plastid | 80.88 | 81.42 |
| CDX73499 | Canola | plastid | 80.88 | 81.42 |
| PGSC0003DMT400013483 | Potato | plastid | 85.05 | 80.96 |
| Solyc03g095260.2.1 | Tomato | plastid | 84.84 | 80.75 |
| CDX76163 | Canola | plastid | 80.44 | 80.44 |
| KRH72561 | Soybean | nucleus | 83.96 | 79.58 |
| Solyc06g048480.2.1 | Tomato | nucleus | 83.74 | 79.38 |
| KRH16944 | Soybean | plastid | 83.3 | 79.12 |
| VIT_08s0056g00230.t01 | Wine grape | plastid | 80.66 | 79.09 |
| KRH53685 | Soybean | nucleus, plastid | 83.08 | 79.08 |
| AT3G54190.1 | Thale cress | plastid | 80.88 | 78.8 |
| KRH64247 | Soybean | nucleus, plastid | 82.86 | 78.54 |
| Bra007053.1-P | Field mustard | plastid | 80.88 | 78.46 |
| CDY13190 | Canola | plastid | 80.44 | 78.37 |
| AT2G38630.1 | Thale cress | plastid | 79.78 | 77.73 |
| Bra014834.1-P | Field mustard | plastid | 80.22 | 77.49 |
| VIT_13s0067g00100.t01 | Wine grape | plastid | 79.56 | 74.33 |
| KRH53714 | Soybean | cytosol | 39.56 | 69.77 |
| KRH40628 | Soybean | plastid | 73.63 | 69.65 |
| KRH00534 | Soybean | plastid | 72.75 | 69.1 |
| Os12t0498300-01 | Rice | mitochondrion | 71.43 | 66.6 |
| Os02t0781800-02 | Rice | cytosol | 35.82 | 63.92 |
| KRH40627 | Soybean | extracellular, plasma membrane | 32.31 | 55.89 |
| Os02t0159400-01 | Rice | nucleus | 9.45 | 14.33 |
Protein Annotations
| EnsemblPlants:Os05t0482600-01 | EnsemblPlantsGene:Os05g0482600 | EntrezGene:4339132 | Gene3D:2.130.10.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:IPR015943 | InterPro:WD40/YVTN_repeat-like_dom_sf | PANTHER:PTHR31789 | ProteinID:BAF17781.1 | ProteinID:BAS94598.1 |
| RefSeq:XP_015639832.1 | SUPFAM:SSF69322 | UniParc:UPI0000E12545 | UniProt:Q0DH92 | MapMan:35.2 | : |
Description
WD40 repeat-like domain containing protein. (Os05t0482600-01)
Coordinates
chr5:+:23743472..23747589
Molecular Weight (calculated)
52417.3 Da
IEP (calculated)
8.446
GRAVY (calculated)
-0.397
Length
455 amino acids
Sequence
(BLAST)
(BLAST)
001: MEARRISASP RPCSGRRVVA RKRPRHEAAV NSVRKLQRRE ISSCRDRAFS MSAAQERFRN IQLQEEFDTH DPKENSLLLP YLRKRSKIIE IVAARDIVFA
101: LSQSGVCAAF SRETNRRICF LNGSPDEVIR SLFYNKNNES LITVSVYGSE NFSALRCRTT RIEYIRRAKP DAGFPLFESE SLKWPGFVEF DDVNGKVLTY
201: SAQDSTYKVF DLKNYTLLYS ISDKNVQEIK ISPGIMLLIY TRTSSSVPLK ILSIEDGTVL KSFNHLLHRN KKVDFIEQFN EKLLVKQEGE NLQILDVRNF
301: QLTEVSRTEF MTPSAFIFLY ELQLFLTFRN RSVAVWNFRG ELVTSFEDHL LWHPDCNTNN IYITSDQDLI ISYCKADSND SSSEENAGSI NISNILTGKC
401: LAKIKASDLC KQKKAWKFQS TALEALEDIT ALYYDEERDE IYTGNRQGLV HVWSN
101: LSQSGVCAAF SRETNRRICF LNGSPDEVIR SLFYNKNNES LITVSVYGSE NFSALRCRTT RIEYIRRAKP DAGFPLFESE SLKWPGFVEF DDVNGKVLTY
201: SAQDSTYKVF DLKNYTLLYS ISDKNVQEIK ISPGIMLLIY TRTSSSVPLK ILSIEDGTVL KSFNHLLHRN KKVDFIEQFN EKLLVKQEGE NLQILDVRNF
301: QLTEVSRTEF MTPSAFIFLY ELQLFLTFRN RSVAVWNFRG ELVTSFEDHL LWHPDCNTNN IYITSDQDLI ISYCKADSND SSSEENAGSI NISNILTGKC
401: LAKIKASDLC KQKKAWKFQS TALEALEDIT ALYYDEERDE IYTGNRQGLV HVWSN
001: MEGRRITASP RPCSGRRIVA KKRSRPDGFV NSVKKLQRRE ISSRKDRAFS ISTAQERFRN MRLVEQYDTH DPKGHCLVAL PFLMKRTKVI EIVAARDIVF
101: ALAHSGVCAA FSRESNKRIC FLNVSPDEVI RSLFYNKNND SLITVSVYAS DNFSSLKCRS TRIEYILRGQ PDAGFALFES ESLKWPGFVE FDDVNGKVLT
201: YSAQDSVYKV FDLKNYTMLY SISDKNVQEI KISPGIMLLI FKRAASHVPL KILSIEDGTV LKSFNHLLHR NKKVDFIEQF NEKLLVKQEN ENLQILDVRN
301: AELMEVSRAE FMTPSAFIFL YENQLFLTFR NRNVSVWNFR GELVTSFEDH LLWHPDCNTN NIYITSDQDL IISYCKADTE DQWIEGNAGS INISNILTGK
401: CLAKITPSSG PPKDDESSSS NCMGKNSKQR RNAVAEALED ITALFYDEER NEIYTGNRHG LVHVWSN
101: ALAHSGVCAA FSRESNKRIC FLNVSPDEVI RSLFYNKNND SLITVSVYAS DNFSSLKCRS TRIEYILRGQ PDAGFALFES ESLKWPGFVE FDDVNGKVLT
201: YSAQDSVYKV FDLKNYTMLY SISDKNVQEI KISPGIMLLI FKRAASHVPL KILSIEDGTV LKSFNHLLHR NKKVDFIEQF NEKLLVKQEN ENLQILDVRN
301: AELMEVSRAE FMTPSAFIFL YENQLFLTFR NRNVSVWNFR GELVTSFEDH LLWHPDCNTN NIYITSDQDL IISYCKADTE DQWIEGNAGS INISNILTGK
401: CLAKITPSSG PPKDDESSSS NCMGKNSKQR RNAVAEALED ITALFYDEER NEIYTGNRHG LVHVWSN
Arabidopsis Description
AT3g54190/F24B22_150 [Source:UniProtKB/TrEMBL;Acc:Q9C5G8]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.