CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plastid

Predictor Summary:

nucleus 4
mitochondrion 2
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH64247	Soybean	nucleus, plastid	97.7	97.29
KRH16944	Soybean	plastid	91.21	91.02
KRH72561	Soybean	nucleus	90.8	90.42
PGSC0003DMT400013483	Potato	plastid	86.82	86.82
Solyc03g095260.2.1	Tomato	plastid	86.61	86.61
Solyc06g048480.2.1	Tomato	nucleus	86.19	85.83
Os05t0482600-01	Rice	plastid	79.08	83.08
EES18406	Sorghum	plastid	78.87	82.68
VIT_13s0067g00100.t01	Wine grape	plastid	82.01	80.49
Zm00001d038513_P002	Maize	plastid	76.99	80.35
TraesCS1A01G303300.1	Wheat	mitochondrion, plastid	75.52	79.34
TraesCS1D01G302800.1	Wheat	mitochondrion, plastid	75.52	79.34
TraesCS1B01G313700.1	Wheat	plastid	74.69	78.46
HORVU1Hr1G069210.3	Barley	nucleus, plastid	74.69	78.46
KRH53714	Soybean	cytosol	41.21	76.36
Zm00001d010625_P003	Maize	plastid	77.2	75.77
Os01t0817800-01	Rice	plastid	70.92	74.67
TraesCS3D01G334700.1	Wheat	nucleus, plastid	69.46	73.94
TraesCS3A01G341100.1	Wheat	nucleus, plastid	69.25	73.72
HORVU3Hr1G080560.3	Barley	nucleus, plastid	69.04	73.5
KRH40628	Soybean	plastid	73.01	72.56
KRH00534	Soybean	plastid	72.18	72.03
TraesCS3B01G373200.1	Wheat	nucleus	62.97	66.89
KRH40627	Soybean	extracellular, plasma membrane	32.64	59.32

Protein Annotations

EMBL:ACUP02003480	EnsemblPlants:KRH53685	EnsemblPlantsGene:GLYMA_06G139900	EntrezGene:100814724	Gene3D:2.130.10.10	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR015943	InterPro:WD40/YVTN_repeat-like_dom_sf	PANTHER:PTHR31789	ProteinID:KRH53685
ProteinID:KRH53685.1	SUPFAM:SSF69322	UniParc:UPI0001BA5546	UniProt:I1KB48	MapMan:35.2	:

Description

hypothetical protein

Coordinates

chr6:-:11411231..11415942

Molecular Weight (calculated)

54468.7 Da

IEP (calculated)

8.349

GRAVY (calculated)

-0.389

Length

478 amino acids

Sequence
(BLAST)

001: MEGGKRITVS PRPCCGRRIV AAKKRPRAND GFVNSVKKLQ RREISSKRDR AFTMSDAQER FRNIRLQEEY DTHDPKGPSS MVLPFLRKRS KIIEIVAARD
101: IVFALAQSGV CAAFSRETNQ RICFLNVSPD EVIRSLFYNK NNDSLITVSV YASDSYSSLK CRSTRIEYIR RGTPDAGFAL FESESLKWPG FVEFDDVNGK
201: VLTYSAQDSI YKVFDLKNYT MLYSISDKNV QEIKISPGIM LLIYAKASSH VPLKILSIED GTILKSFSHL LYRNKKVDFI EQFNEKLLVK QENENLQILD
301: VRTFEHTEVC RSEFMTPSAF IFLYENQLFL TFRNRTVAVW NFRGELVTSF EDHLLWHPDC NTNNIYITSD QDLIISYCKA DSDDSLSEGN AGSINVSNIL
401: TGKCLAKIRA SNSFPVDNSC SDNPSGSCCC NSKKRKHGSK TRSTVAEALE DITALFYDEE RNEIYTGNRH GLVHVWSN

Best Arabidopsis Sequence Match ( AT3G54190.1 )
(BLAST)

001: MEGRRITASP RPCSGRRIVA KKRSRPDGFV NSVKKLQRRE ISSRKDRAFS ISTAQERFRN MRLVEQYDTH DPKGHCLVAL PFLMKRTKVI EIVAARDIVF
101: ALAHSGVCAA FSRESNKRIC FLNVSPDEVI RSLFYNKNND SLITVSVYAS DNFSSLKCRS TRIEYILRGQ PDAGFALFES ESLKWPGFVE FDDVNGKVLT
201: YSAQDSVYKV FDLKNYTMLY SISDKNVQEI KISPGIMLLI FKRAASHVPL KILSIEDGTV LKSFNHLLHR NKKVDFIEQF NEKLLVKQEN ENLQILDVRN
301: AELMEVSRAE FMTPSAFIFL YENQLFLTFR NRNVSVWNFR GELVTSFEDH LLWHPDCNTN NIYITSDQDL IISYCKADTE DQWIEGNAGS INISNILTGK
401: CLAKITPSSG PPKDDESSSS NCMGKNSKQR RNAVAEALED ITALFYDEER NEIYTGNRHG LVHVWSN

Arabidopsis Description

AT3g54190/F24B22_150 [Source:UniProtKB/TrEMBL;Acc:Q9C5G8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.