CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G035370.20	Barley	cytosol	67.88	26.23
EES16005	Sorghum	mitochondrion, nucleus	67.27	22.98
TraesCS5B01G109800.2	Wheat	nucleus	65.45	22.41
TraesCS5D01G116900.2	Wheat	mitochondrion, nucleus	65.45	22.41
GSMUA_Achr5P05140_001	Banana	nucleus	64.24	22.22
TraesCS5A01G107600.1	Wheat	mitochondrion	64.85	22.2
Os12t0498300-01	Rice	mitochondrion	65.45	22.13
EES18406	Sorghum	plastid	58.18	21.05
GSMUA_Achr1P21860_001	Banana	cytosol	60.61	21.01
GSMUA_AchrUn_...	Banana	nucleus	60.61	21.01
EES07638	Sorghum	mitochondrion	56.36	19.02
GSMUA_Achr3P05870_001	Banana	cytosol	57.58	17.4
OQU76005	Sorghum	nucleus	5.45	4.79

Protein Annotations

EnsemblPlants:OQU79156	EnsemblPlantsGene:SORBI_3008G101850	PANTHER:PTHR31789	PANTHER:PTHR31789:SF2	ProteinID:OQU79156	ProteinID:OQU79156.1
UniParc:UPI000B8B9B8B	UniProt:A0A1Z5R720	MapMan:35.2	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:48454913..48458446

Molecular Weight (calculated)

19262.2 Da

IEP (calculated)

5.297

GRAVY (calculated)

-0.185

Length

165 amino acids

Sequence
(BLAST)

001: MKCRTTPIEY IRRNQLDAGL PLFESESFKW PGFVVFDDVN GKVLTCSATD GIYKVFDSKN YSFLYSIPDE NIHDIKMRFA FFPSDLSILL YFRGPKDDLL
101: ISYYSEGTIL LIYDRAMSHV PLKILSIEDG KPLKSVKLWL HPNKEISFIE QFNEKIFVKQ EDENL

Best Arabidopsis Sequence Match ( AT2G38630.3 )
(BLAST)

001: MMEGRRIIAN PRPCSGSRRV IAKKRSRPDG FVNSVKKLQR REISSRMDRA FSISTAQERF RNMRLVEQYD THDPKGYCLV SLPNLLKRSK VIEIVAARDI
101: VFALTLSGVC ASFSRETNKK VCFLNVSPDE VIRSLFYNKN NDSLITVSVY ASDNYSSLKC RSTRIEYILR GQADAGFPLF ESESLKWPGF VEFDDVNGKV
201: LTYSAQDSVY KVFDLKNYAL LYSISDKNVQ EIKISPGIML LIFKRAASHV PLKILSIEDG TLLKSFHHLL HRNKKVDFIE QFNEKLLVKQ ENENLQILDV
301: SGFVFVVQAA LYICVFMFLI EFYVLKGSKC

Arabidopsis Description

Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q84J57]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.