Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G107600.1 | Wheat | mitochondrion | 91.8 | 81.33 |
| TraesCS5B01G109800.2 | Wheat | nucleus | 91.8 | 81.33 |
| TraesCS5D01G116900.2 | Wheat | mitochondrion, nucleus | 91.8 | 81.33 |
| Os12t0498300-01 | Rice | mitochondrion | 85.01 | 74.39 |
| EES16005 | Sorghum | mitochondrion, nucleus | 82.9 | 73.29 |
| Zm00001d023762_P001 | Maize | mitochondrion | 81.26 | 71.84 |
| GSMUA_AchrUn_... | Banana | nucleus | 77.52 | 69.54 |
| Zm00001d041759_P002 | Maize | cytosol, mitochondrion | 81.73 | 68.84 |
| GSMUA_Achr5P05140_001 | Banana | nucleus | 76.81 | 68.76 |
| GSMUA_Achr1P21860_001 | Banana | cytosol | 76.35 | 68.49 |
| OQU79156 | Sorghum | cytosol | 26.23 | 67.88 |
| HORVU1Hr1G069210.3 | Barley | nucleus, plastid | 67.21 | 63.08 |
| HORVU3Hr1G080560.3 | Barley | nucleus, plastid | 65.11 | 61.92 |
| HORVU6Hr1G082150.2 | Barley | mitochondrion | 67.21 | 59.05 |
| GSMUA_Achr3P05870_001 | Banana | cytosol | 68.62 | 53.66 |
Protein Annotations
| EnsemblPlants:HORVU5Hr1G035370.20 | EnsemblPlantsGene:HORVU5Hr1G035370 | Gene3D:2.130.10.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR015943 | InterPro:WD40/YVTN_repeat-like_dom_sf | PANTHER:PTHR31789 | PANTHER:PTHR31789:SF2 | SEG:seg | SUPFAM:SSF101908 |
| UniParc:UPI000B47E922 | UniProt:A0A287QUR4 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chrchr5H:+:245580704..245583027
Molecular Weight (calculated)
48847.3 Da
IEP (calculated)
4.988
GRAVY (calculated)
-0.082
Length
427 amino acids
Sequence
(BLAST)
(BLAST)
001: QEEFDTYDHD AHLFVKLQFL KKRSKIIEIV AAKDIIFALA HSGLCAAFSR VTNKRLSFLN LSPDEVIRSL FYNKNNDSLI TVSVYASDQF STLKCRTTPI
101: EYIRRDQLDA GFPLFESESL KWPGFVEFDD VNGKVLTYSA QDGIYKVFDL KNYSFLYSIP DTNVQEIKIR SAPFSLFIIF FIFIFEPCQV TPSISRFSPG
201: IMLLIYDRMP SYVPLKILSI EDGKPLKLFK HLLHRGKKID FIEQFNEKLL VKQEDENLQI LDVRSSELIE ISIEKFMTPS AFIFLYENNL FLTFRNRTVA
301: VWNFRGELVT SFEDHLLWHQ DCSTNNIYIT TDQDLIISYC KSDAASDDGT ASPIGSINMS DIMTGKCIAK IAANDPSLSI APRKNGSPSI WSSIPEALED
401: VTALFYDEDR NEIYTGNSQG LVHVWSS
101: EYIRRDQLDA GFPLFESESL KWPGFVEFDD VNGKVLTYSA QDGIYKVFDL KNYSFLYSIP DTNVQEIKIR SAPFSLFIIF FIFIFEPCQV TPSISRFSPG
201: IMLLIYDRMP SYVPLKILSI EDGKPLKLFK HLLHRGKKID FIEQFNEKLL VKQEDENLQI LDVRSSELIE ISIEKFMTPS AFIFLYENNL FLTFRNRTVA
301: VWNFRGELVT SFEDHLLWHQ DCSTNNIYIT TDQDLIISYC KSDAASDDGT ASPIGSINMS DIMTGKCIAK IAANDPSLSI APRKNGSPSI WSSIPEALED
401: VTALFYDEDR NEIYTGNSQG LVHVWSS
001: MMEGRRIIAN PRPCSGSRRV IAKKRSRPDG FVNSVKKLQR REISSRMDRA FSISTAQERF RNMRLVEQYD THDPKGYCLV SLPNLLKRSK VIEIVAARDI
101: VFALTLSGVC ASFSRETNKK VCFLNVSPDE VIRSLFYNKN NDSLITVSVY ASDNYSSLKC RSTRIEYILR GQADAGFPLF ESESLKWPGF VEFDDVNGKV
201: LTYSAQDSVY KVFDLKNYAL LYSISDKNVQ EIKISPGIML LIFKRAASHV PLKILSIEDG TLLKSFHHLL HRNKKVDFIE QFNEKLLVKQ ENENLQILDV
301: RNAELIEVSR TDFMTPSAFI FLYENQLFLT FRNRNVSVWN FRGELVTSFE DHLLWHPDCN TNNIYITSDQ DLIISYCKAD TEDQWIEGNA GSINISNILT
401: GKCLAKIKAN NGPPKEEDCS SSDLGNSSRR RSAVAEALED ITALFYDEER NEIYTGNRHG LLHVWSN
101: VFALTLSGVC ASFSRETNKK VCFLNVSPDE VIRSLFYNKN NDSLITVSVY ASDNYSSLKC RSTRIEYILR GQADAGFPLF ESESLKWPGF VEFDDVNGKV
201: LTYSAQDSVY KVFDLKNYAL LYSISDKNVQ EIKISPGIML LIFKRAASHV PLKILSIEDG TLLKSFHHLL HRNKKVDFIE QFNEKLLVKQ ENENLQILDV
301: RNAELIEVSR TDFMTPSAFI FLYENQLFLT FRNRNVSVWN FRGELVTSFE DHLLWHPDCN TNNIYITSDQ DLIISYCKAD TEDQWIEGNA GSINISNILT
401: GKCLAKIKAN NGPPKEEDCS SSDLGNSSRR RSAVAEALED ITALFYDEER NEIYTGNRHG LLHVWSN
Arabidopsis Description
Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q84J57]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.