Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 4
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES16005 | Sorghum | mitochondrion, nucleus | 94.62 | 94.62 |
| TraesCS5D01G116900.2 | Wheat | mitochondrion, nucleus | 85.09 | 85.27 |
| TraesCS5A01G107600.1 | Wheat | mitochondrion | 84.47 | 84.65 |
| TraesCS5B01G109800.2 | Wheat | nucleus | 84.47 | 84.65 |
| Os12t0498300-01 | Rice | mitochondrion | 84.27 | 83.4 |
| Zm00001d041759_P002 | Maize | cytosol, mitochondrion | 86.54 | 82.45 |
| HORVU5Hr1G035370.20 | Barley | cytosol | 71.84 | 81.26 |
| GSMUA_Achr5P05140_001 | Banana | nucleus | 74.74 | 75.68 |
| GSMUA_Achr1P21860_001 | Banana | cytosol | 74.12 | 75.21 |
| GSMUA_AchrUn_... | Banana | nucleus | 74.12 | 75.21 |
| Zm00001d038513_P002 | Maize | plastid | 65.01 | 68.56 |
| Zm00001d010625_P003 | Maize | plastid | 66.46 | 65.91 |
| GSMUA_Achr3P05870_001 | Banana | cytosol | 64.18 | 56.78 |
| Zm00001d018291_P002 | Maize | cytosol, mitochondrion, nucleus, plastid | 65.42 | 52.84 |
Protein Annotations
| EMBL:BT037755 | EnsemblPlants:Zm00001d023762_P001 | EnsemblPlants:Zm00001d023762_T001 | EnsemblPlantsGene:Zm00001d023762 | EntrezGene:100217002 | Gene3D:2.130.10.10 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR015943 | InterPro:WD40/YVTN_repeat-like_dom_sf | PANTHER:PTHR31789 |
| PANTHER:PTHR31789:SF2 | ProteinID:AQK39988.1 | SEG:seg | SUPFAM:SSF69322 | UniParc:UPI00017B6A2F | UniProt:B4FKW7 |
| MapMan:35.2 | : | : | : | : | : |
Description
Transducin/WD40 repeat-like superfamily protein
Coordinates
chr10:-:19189183..19193087
Molecular Weight (calculated)
54826.3 Da
IEP (calculated)
8.179
GRAVY (calculated)
-0.333
Length
483 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGPKRSQLR VRLRVTARRR GADGDGAGGA AGPGGRKRRM EAPVRNSVAK LQRREIGGRQ LAARGGGPAA AVPERFRNMQ LQEEFDTYDE NAHLFVKLQF
101: LKRRSKIIEI VAAKDIIFAL ANSGLCAAFD RVTNKRIAFL NLSPDEVIRS LFYNKNNDSL ITVSVYAADK FSTLKCRTTP IEYIRRNQLD AGFPLFESES
201: LKWPGFVEFD DVNGKVLTYS AQDGIYKVFE LKNYSFLYSI PDENVQEIKI SPGIMLLIYD RTPSYVPLKI LSIEDGKQLK SFKHLLHRNK KIDFIEQFNE
301: KLLVKQENEN FQIFDVRSSE LIEVSVSKFM TPSAFIFLYE NNLFLTFRNR TVAVWDFRGE LVTSFEDHLL WHNDCSTNNI YITSDQDLII SYCKSEAVAE
401: DGTVVPVGSI NISEIMTGRC IAKITANDPS LSVPGRRNGY SKRSSDWSTV PEALEDVTAL FYDEDRNEIY TGNSHGLVHV WSN
101: LKRRSKIIEI VAAKDIIFAL ANSGLCAAFD RVTNKRIAFL NLSPDEVIRS LFYNKNNDSL ITVSVYAADK FSTLKCRTTP IEYIRRNQLD AGFPLFESES
201: LKWPGFVEFD DVNGKVLTYS AQDGIYKVFE LKNYSFLYSI PDENVQEIKI SPGIMLLIYD RTPSYVPLKI LSIEDGKQLK SFKHLLHRNK KIDFIEQFNE
301: KLLVKQENEN FQIFDVRSSE LIEVSVSKFM TPSAFIFLYE NNLFLTFRNR TVAVWDFRGE LVTSFEDHLL WHNDCSTNNI YITSDQDLII SYCKSEAVAE
401: DGTVVPVGSI NISEIMTGRC IAKITANDPS LSVPGRRNGY SKRSSDWSTV PEALEDVTAL FYDEDRNEIY TGNSHGLVHV WSN
001: MEGRRITASP RPCSGRRIVA KKRSRPDGFV NSVKKLQRRE ISSRKDRAFS ISTAQERFRN MRLVEQYDTH DPKGHCLVAL PFLMKRTKVI EIVAARDIVF
101: ALAHSGVCAA FSRESNKRIC FLNVSPDEVI RSLFYNKNND SLITVSVYAS DNFSSLKCRS TRIEYILRGQ PDAGFALFES ESLKWPGFVE FDDVNGKVLT
201: YSAQDSVYKV FDLKNYTMLY SISDKNVQEI KISPGIMLLI FKRAASHVPL KILSIEDGTV LKSFNHLLHR NKKVDFIEQF NEKLLVKQEN ENLQILDVRN
301: AELMEVSRAE FMTPSAFIFL YENQLFLTFR NRNVSVWNFR GELVTSFEDH LLWHPDCNTN NIYITSDQDL IISYCKADTE DQWIEGNAGS INISNILTGK
401: CLAKITPSSG PPKDDESSSS NCMGKNSKQR RNAVAEALED ITALFYDEER NEIYTGNRHG LVHVWSN
101: ALAHSGVCAA FSRESNKRIC FLNVSPDEVI RSLFYNKNND SLITVSVYAS DNFSSLKCRS TRIEYILRGQ PDAGFALFES ESLKWPGFVE FDDVNGKVLT
201: YSAQDSVYKV FDLKNYTMLY SISDKNVQEI KISPGIMLLI FKRAASHVPL KILSIEDGTV LKSFNHLLHR NKKVDFIEQF NEKLLVKQEN ENLQILDVRN
301: AELMEVSRAE FMTPSAFIFL YENQLFLTFR NRNVSVWNFR GELVTSFEDH LLWHPDCNTN NIYITSDQDL IISYCKADTE DQWIEGNAGS INISNILTGK
401: CLAKITPSSG PPKDDESSSS NCMGKNSKQR RNAVAEALED ITALFYDEER NEIYTGNRHG LVHVWSN
Arabidopsis Description
AT3g54190/F24B22_150 [Source:UniProtKB/TrEMBL;Acc:Q9C5G8]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.