Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 2
- cytosol 1
- nucleus 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P21860_001 | Banana | cytosol | 93.49 | 93.49 |
| GSMUA_Achr5P05140_001 | Banana | nucleus | 83.4 | 83.23 |
| HORVU5Hr1G035370.20 | Barley | cytosol | 69.54 | 77.52 |
| Os12t0498300-01 | Rice | mitochondrion | 77.1 | 75.2 |
| EES16005 | Sorghum | mitochondrion, nucleus | 76.05 | 74.95 |
| TraesCS5D01G116900.2 | Wheat | mitochondrion, nucleus | 75.63 | 74.69 |
| TraesCS5B01G109800.2 | Wheat | nucleus | 75.63 | 74.69 |
| TraesCS5A01G107600.1 | Wheat | mitochondrion | 75.42 | 74.48 |
| Zm00001d023762_P001 | Maize | mitochondrion | 75.21 | 74.12 |
| Zm00001d041759_P002 | Maize | cytosol, mitochondrion | 76.89 | 72.19 |
| Os02t0781800-02 | Rice | cytosol | 36.97 | 69.02 |
| EES07638 | Sorghum | mitochondrion | 70.59 | 68.71 |
| HORVU6Hr1G082150.2 | Barley | mitochondrion | 68.28 | 66.87 |
| TraesCS6B01G371900.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 68.07 | 66.39 |
| GSMUA_Achr3P05870_001 | Banana | cytosol | 71.01 | 61.9 |
| OQU79156 | Sorghum | cytosol | 21.01 | 60.61 |
| Zm00001d018291_P002 | Maize | cytosol, mitochondrion, nucleus, plastid | 69.12 | 55.02 |
Protein Annotations
| EnsemblPlants:GSMUA_AchrUn_randomP23120_001 | EnsemblPlants:GSMUA_AchrUn_randomT23120_001 | EnsemblPlantsGene:GSMUA_AchrUn_randomG23120_001 | Gene3D:2.130.10.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:IPR015943 | InterPro:WD40/YVTN_repeat-like_dom_sf | PANTHER:PTHR31789 | PANTHER:PTHR31789:SF2 | SUPFAM:SSF69322 |
| UniParc:UPI000294C33D | UniProt:M0UBM0 | MapMan:35.2 | : | : | : |
Description
expressed protein [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG23120_001]
Coordinates
chrchrUn_random:+:113235541..113240459
Molecular Weight (calculated)
54522.0 Da
IEP (calculated)
8.332
GRAVY (calculated)
-0.349
Length
476 amino acids
Sequence
(BLAST)
(BLAST)
001: MENHKKTPVR VRFRVTAKKR GCDAGASCSG KRGRQRDCVN SVRKLQRREI GALPRMARGA ASDAAEKFRN IQLQEEFDTY DHNVHWFVKL QFLKKRSKII
101: EIVSAKDIIF ALAQSGLCAA FSRTTNKRIC FLNISPDEVI RSLFYNKNND SLITVSVYAS DHFSSLKCRT TPIEYIKRSQ LDAGFPLFES ESLKWPGFVE
201: FDDVNGKVLT YSAQDGIYKV FDLKNYNFLY AISDKNVQEI KISPGIMLLI FNRTPSYVPL KILSIEDGTV LKSFNHLLHR NKKVDFIEQF NEKLLVKQEN
301: ENLQILDVRD SELTEVSRTE FMTPSAFIFL YENHLFLTFR NRTVAVWNFR GELVTSFEDH LLWHPDCNTN NIYITSDQDL IISYCKAEEG CGDEGEVSAV
401: GSINMSNILT GKCIAKISAS DPALQISPRR RCETGRSSIR STVREALEDV TALFYDEERN EIYTGNKQGL IHVWSN
101: EIVSAKDIIF ALAQSGLCAA FSRTTNKRIC FLNISPDEVI RSLFYNKNND SLITVSVYAS DHFSSLKCRT TPIEYIKRSQ LDAGFPLFES ESLKWPGFVE
201: FDDVNGKVLT YSAQDGIYKV FDLKNYNFLY AISDKNVQEI KISPGIMLLI FNRTPSYVPL KILSIEDGTV LKSFNHLLHR NKKVDFIEQF NEKLLVKQEN
301: ENLQILDVRD SELTEVSRTE FMTPSAFIFL YENHLFLTFR NRTVAVWNFR GELVTSFEDH LLWHPDCNTN NIYITSDQDL IISYCKAEEG CGDEGEVSAV
401: GSINMSNILT GKCIAKISAS DPALQISPRR RCETGRSSIR STVREALEDV TALFYDEERN EIYTGNKQGL IHVWSN
001: MEGRRITASP RPCSGRRIVA KKRSRPDGFV NSVKKLQRRE ISSRKDRAFS ISTAQERFRN MRLVEQYDTH DPKGHCLVAL PFLMKRTKVI EIVAARDIVF
101: ALAHSGVCAA FSRESNKRIC FLNVSPDEVI RSLFYNKNND SLITVSVYAS DNFSSLKCRS TRIEYILRGQ PDAGFALFES ESLKWPGFVE FDDVNGKVLT
201: YSAQDSVYKV FDLKNYTMLY SISDKNVQEI KISPGIMLLI FKRAASHVPL KILSIEDGTV LKSFNHLLHR NKKVDFIEQF NEKLLVKQEN ENLQILDVRN
301: AELMEVSRAE FMTPSAFIFL YENQLFLTFR NRNVSVWNFR GELVTSFEDH LLWHPDCNTN NIYITSDQDL IISYCKADTE DQWIEGNAGS INISNILTGK
401: CLAKITPSSG PPKDDESSSS NCMGKNSKQR RNAVAEALED ITALFYDEER NEIYTGNRHG LVHVWSN
101: ALAHSGVCAA FSRESNKRIC FLNVSPDEVI RSLFYNKNND SLITVSVYAS DNFSSLKCRS TRIEYILRGQ PDAGFALFES ESLKWPGFVE FDDVNGKVLT
201: YSAQDSVYKV FDLKNYTMLY SISDKNVQEI KISPGIMLLI FKRAASHVPL KILSIEDGTV LKSFNHLLHR NKKVDFIEQF NEKLLVKQEN ENLQILDVRN
301: AELMEVSRAE FMTPSAFIFL YENQLFLTFR NRNVSVWNFR GELVTSFEDH LLWHPDCNTN NIYITSDQDL IISYCKADTE DQWIEGNAGS INISNILTGK
401: CLAKITPSSG PPKDDESSSS NCMGKNSKQR RNAVAEALED ITALFYDEER NEIYTGNRHG LVHVWSN
Arabidopsis Description
AT3g54190/F24B22_150 [Source:UniProtKB/TrEMBL;Acc:Q9C5G8]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.