Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G371900.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 96.5 | 96.11 |
| EES07638 | Sorghum | mitochondrion | 83.95 | 83.44 |
| Os02t0781800-02 | Rice | cytosol | 43.42 | 82.75 |
| GSMUA_Achr5P05140_001 | Banana | nucleus | 68.52 | 69.81 |
| GSMUA_AchrUn_... | Banana | nucleus | 66.87 | 68.28 |
| HORVU5Hr1G035370.20 | Barley | cytosol | 59.05 | 67.21 |
| GSMUA_Achr1P21860_001 | Banana | cytosol | 65.64 | 67.02 |
| Zm00001d018291_P002 | Maize | cytosol, mitochondrion, nucleus, plastid | 81.89 | 66.56 |
| HORVU1Hr1G069210.3 | Barley | nucleus, plastid | 60.91 | 65.05 |
| HORVU3Hr1G080560.3 | Barley | nucleus, plastid | 57.0 | 61.69 |
| GSMUA_Achr3P05870_001 | Banana | cytosol | 59.47 | 52.93 |
Protein Annotations
| EnsemblPlants:HORVU6Hr1G082150.2 | EnsemblPlantsGene:HORVU6Hr1G082150 | Gene3D:2.130.10.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR015943 | InterPro:WD40/YVTN_repeat-like_dom_sf | PANTHER:PTHR31789 | PANTHER:PTHR31789:SF3 | SEG:seg | SUPFAM:SSF69322 |
| UniParc:UPI000B4852E0 | UniProt:A0A287UXI7 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chrchr6H:+:547246789..547252358
Molecular Weight (calculated)
55802.1 Da
IEP (calculated)
7.984
GRAVY (calculated)
-0.470
Length
486 amino acids
Sequence
(BLAST)
(BLAST)
001: MDHQHHKAGL RGRLRVTAAR RRAWQQQSAA CCKRPARRDP VDTVRKFMRR EIGGGHRRPP RPAAPSTSAF SCPEKFRNFQ LQEEYDTYDD PFVQLPLGWN
101: RRRIIEIVAA RDLIFALAEC GLCGAFNRTT NKRICHLNIS PDEVIRSLFY NKNNDSLITV SVYESDRYSS LKCRTTPIEY IRRGQLHDGF PLFETESLKY
201: PGFVEFDDVN GKVLTFSAHD STYKVFDLKN YNFLYSICDK DIQEIKISPG IMLVIYQKAS NHVPLRILSI EDGTPLKTFT QLLHRNRKVD FIEQFNEKLL
301: VKQDKENLQI IDVRNSGLIE VNKTEFMTPS AFIFLYENNL FLTFCNRTVA AWNFRGELVT SFDDHELWHP NCNTNNIYIT ADQDLIISYC KVSRGGTNDA
401: DDEGREGSCM GSINMSNIFT GKCVAKISAF DPTLTIAPRR NGDTSRSTIR SSVSDALEDI TALFYDEDRN EIYTGNSRGL VHVWSN
101: RRRIIEIVAA RDLIFALAEC GLCGAFNRTT NKRICHLNIS PDEVIRSLFY NKNNDSLITV SVYESDRYSS LKCRTTPIEY IRRGQLHDGF PLFETESLKY
201: PGFVEFDDVN GKVLTFSAHD STYKVFDLKN YNFLYSICDK DIQEIKISPG IMLVIYQKAS NHVPLRILSI EDGTPLKTFT QLLHRNRKVD FIEQFNEKLL
301: VKQDKENLQI IDVRNSGLIE VNKTEFMTPS AFIFLYENNL FLTFCNRTVA AWNFRGELVT SFDDHELWHP NCNTNNIYIT ADQDLIISYC KVSRGGTNDA
401: DDEGREGSCM GSINMSNIFT GKCVAKISAF DPTLTIAPRR NGDTSRSTIR SSVSDALEDI TALFYDEDRN EIYTGNSRGL VHVWSN
001: MMEGRRIIAN PRPCSGSRRV IAKKRSRPDG FVNSVKKLQR REISSRMDRA FSISTAQERF RNMRLVEQYD THDPKGYCLV SLPNLLKRSK VIEIVAARDI
101: VFALTLSGVC ASFSRETNKK VCFLNVSPDE VIRSLFYNKN NDSLITVSVY ASDNYSSLKC RSTRIEYILR GQADAGFPLF ESESLKWPGF VEFDDVNGKV
201: LTYSAQDSVY KVFDLKNYAL LYSISDKNVQ EIKISPGIML LIFKRAASHV PLKILSIEDG TLLKSFHHLL HRNKKVDFIE QFNEKLLVKQ ENENLQILDV
301: RNAELIEVSR TDFMTPSAFI FLYENQLFLT FRNRNVSVWN FRGELVTSFE DHLLWHPDCN TNNIYITSDQ DLIISYCKAD TEDQWIEGNA GSINISNILT
401: GKCLAKIKAN NGPPKEEDCS SSDLGNSSRR RSAVAEALED ITALFYDEER NEIYTGNRHG LLHVWSN
101: VFALTLSGVC ASFSRETNKK VCFLNVSPDE VIRSLFYNKN NDSLITVSVY ASDNYSSLKC RSTRIEYILR GQADAGFPLF ESESLKWPGF VEFDDVNGKV
201: LTYSAQDSVY KVFDLKNYAL LYSISDKNVQ EIKISPGIML LIFKRAASHV PLKILSIEDG TLLKSFHHLL HRNKKVDFIE QFNEKLLVKQ ENENLQILDV
301: RNAELIEVSR TDFMTPSAFI FLYENQLFLT FRNRNVSVWN FRGELVTSFE DHLLWHPDCN TNNIYITSDQ DLIISYCKAD TEDQWIEGNA GSINISNILT
401: GKCLAKIKAN NGPPKEEDCS SSDLGNSSRR RSAVAEALED ITALFYDEER NEIYTGNRHG LLHVWSN
Arabidopsis Description
Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q84J57]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.