CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH00534
KRH04275
KRH23958
KRH24006
KRH27971
KRH28216
KRH29310
KRH39841
KRH40627
KRH40628
KRH57556
KRH77271
KRH77487

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G61340.1	KRH24006	AT3G48150.1	21798944
AT1G61340.1	KRH27971	AT3G48150.1	21798944
AT1G61340.1	KRH29310	AT3G48150.1	21798944
AT1G61340.1	KRH77487	AT3G48150.1	21798944
AT1G61340.1	KRH00534	AT3G54190.1	21798944
AT1G61340.1	KRH40627	AT3G54190.1	21798944
AT1G61340.1	KRH40628	AT3G54190.1	21798944
AT1G61340.1	KRH04275	AT4G17680.1	21798944
AT1G61340.1	KRH28216	AT4G17680.1	21798944
AT1G61340.1	KRH57556	AT4G17680.1	21798944
AT1G61340.1	KRH77271	AT4G17680.1	21798944
AT1G61340.1	KRH23958	AT4G25200.1	21798944
AT1G61340.1	KRH39841	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH10756	Soybean	cytosol	53.29	71.05
KRH21550	Soybean	cytosol	28.29	50.0
KRH49947	Soybean	mitochondrion, plastid	50.0	49.03
KRH41926	Soybean	plastid	48.68	47.74
PGSC0003DMT400012930	Potato	cytosol	40.13	38.36
Solyc02g079150.1.1	Tomato	mitochondrion	41.45	38.18
Solyc10g005480.2.1	Tomato	cytosol, plastid	44.08	37.85
Solyc03g006640.2.1	Tomato	cytosol	38.82	37.11
KRH49741	Soybean	mitochondrion	39.47	37.04
PGSC0003DMT400029256	Potato	plastid	42.76	36.72
AT4G05010.1	Thale cress	nucleus	39.47	36.59
PGSC0003DMT400057575	Potato	mitochondrion	22.37	36.56
CDY19351	Canola	cytosol, mitochondrion, nucleus	34.87	36.05
VIT_00s0181g00080.t01	Wine grape	nucleus	40.13	35.47
CDX97944	Canola	mitochondrion	34.21	35.37
Bra019871.1-P	Field mustard	mitochondrion	34.21	35.37
GSMUA_Achr6P29300_001	Banana	cytosol	29.61	35.16
Zm00001d021779_P001	Maize	cytosol	25.0	34.55
GSMUA_Achr9P02840_001	Banana	cytosol	37.5	34.55
AT1G61340.1	Thale cress	mitochondrion, nucleus	40.13	32.97
CDY44748	Canola	nucleus	36.84	32.94
CDY16621	Canola	nucleus	36.84	32.94
Bra029548.1-P	Field mustard	nucleus	36.84	32.94
HORVU2Hr1G040830.2	Barley	plastid	35.53	32.93
TraesCS2D01G211000.1	Wheat	plastid	34.87	32.32
TraesCS2B01G232500.1	Wheat	plastid	34.87	32.32
TraesCS2A01G205100.1	Wheat	plastid	34.87	32.32
KXG36477	Sorghum	plastid	34.87	31.18
Bra031435.1-P	Field mustard	cytosol, mitochondrion	36.84	31.11
CDY47573	Canola	cytosol, mitochondrion	36.84	31.11
Os07t0561300-01	Rice	plastid	33.55	30.36
CDY15010	Canola	mitochondrion, nucleus	35.53	29.83
CDX79068	Canola	endoplasmic reticulum, extracellular	39.47	28.99
Bra013532.1-P	Field mustard	endoplasmic reticulum	39.47	28.99
CDX90883	Canola	nucleus	32.89	28.09
CDY21323	Canola	nucleus	32.89	28.09
CDX82831	Canola	endoplasmic reticulum	38.16	28.02
AT4G21510.1	Thale cress	cytosol	40.79	27.56
Bra000811.1-P	Field mustard	nucleus	31.58	26.97
Zm00001d006591_P001	Maize	plastid	29.61	26.47
CDY72037	Canola	mitochondrion	36.18	25.7
CDY03828	Canola	mitochondrion	38.16	25.55
Bra038577.1-P	Field mustard	mitochondrion	24.34	23.42
CDY40953	Canola	extracellular, golgi	19.74	16.13

Protein Annotations

EMBL:ACUP02008360	EnsemblPlants:KRH21571	EnsemblPlantsGene:GLYMA_13G246200	EntrezGene:100796581	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR34049	PANTHER:PTHR34049:SF1
PFscan:PS50181	ProteinID:KRH21571	ProteinID:KRH21571.1	SEG:seg	SUPFAM:SSF81383	UniParc:UPI0003DEACB8
UniProt:A0A0R0H1B6	MapMan:35.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:+:35511992..35512643

Molecular Weight (calculated)

17489.2 Da

IEP (calculated)

10.017

GRAVY (calculated)

-0.350

Length

152 amino acids

Sequence
(BLAST)

001: MTVGFDGLTY TLTLGRKRVV VSDDVKVSPR LKRIYRDRVS LNSKRSLLDA LPQDVLVQVL CGVDHEDLKQ LFHVSKTIRE ATTVVKKLHF DISTPKKKTF
101: GFLNPFDLED VNGFEEIEAP NRVLRKAKSR LNRKKLDDNV LQVLFAFMDE DQ

Best Arabidopsis Sequence Match ( AT1G61340.2 )
(BLAST)

001: MALGKKRIVT QKPNLRQRRD VDNGGLGLGL EFVQYKRGFG RKRILISSGD EMEDSIFTSP VGKKLCDDKT TSVAEGQSRE LEDLPLDILV RIICGVEHED
101: LKQLFHVSKT IREATMIAKQ SHFAYSTPRK TSVFHHGRFG WDKPFDVEDD DEEIEAPGAP LQKRYRLSRI NRNKDDSGVS VALFH

Arabidopsis Description

F-box protein At1g61340 [Source:UniProtKB/Swiss-Prot;Acc:Q8GX77]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.