Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400012930 | Potato | cytosol | 89.94 | 89.94 |
| Solyc10g005480.2.1 | Tomato | cytosol, plastid | 57.86 | 51.98 |
| Solyc02g079150.1.1 | Tomato | mitochondrion | 47.8 | 46.06 |
| KRH10756 | Soybean | cytosol | 32.08 | 44.74 |
| VIT_00s0181g00080.t01 | Wine grape | nucleus | 46.54 | 43.02 |
| KRH21571 | Soybean | cytosol | 37.11 | 38.82 |
| KRH41926 | Soybean | plastid | 37.74 | 38.71 |
| AT4G05010.1 | Thale cress | nucleus | 39.62 | 38.41 |
| KRH49947 | Soybean | mitochondrion, plastid | 37.11 | 38.06 |
| GSMUA_Achr6P29300_001 | Banana | cytosol | 30.19 | 37.5 |
| CDY19351 | Canola | cytosol, mitochondrion, nucleus | 34.59 | 37.41 |
| KRH21550 | Soybean | cytosol | 20.13 | 37.21 |
| GSMUA_Achr9P02840_001 | Banana | cytosol | 38.36 | 36.97 |
| Bra019871.1-P | Field mustard | mitochondrion | 33.96 | 36.73 |
| CDX97944 | Canola | mitochondrion | 33.96 | 36.73 |
| Zm00001d021779_P001 | Maize | cytosol | 25.16 | 36.36 |
| CDY47573 | Canola | cytosol, mitochondrion | 40.25 | 35.56 |
| Bra031435.1-P | Field mustard | cytosol, mitochondrion | 40.25 | 35.56 |
| CDY16621 | Canola | nucleus | 37.74 | 35.29 |
| CDY44748 | Canola | nucleus | 37.74 | 35.29 |
| Bra029548.1-P | Field mustard | nucleus | 37.74 | 35.29 |
| AT1G61340.1 | Thale cress | mitochondrion, nucleus | 40.88 | 35.14 |
| CDY15010 | Canola | mitochondrion, nucleus | 38.36 | 33.7 |
| Os07t0561300-01 | Rice | plastid | 35.22 | 33.33 |
| Bra000811.1-P | Field mustard | nucleus | 37.11 | 33.15 |
| TraesCS2A01G205100.1 | Wheat | plastid | 33.96 | 32.93 |
| TraesCS2D01G211000.1 | Wheat | plastid | 33.33 | 32.32 |
| HORVU2Hr1G040830.2 | Barley | plastid | 33.33 | 32.32 |
| CDY21323 | Canola | nucleus | 35.85 | 32.02 |
| CDX90883 | Canola | nucleus | 35.85 | 32.02 |
| KXG36477 | Sorghum | plastid | 33.96 | 31.76 |
| TraesCS2B01G232500.1 | Wheat | plastid | 32.7 | 31.71 |
| Bra038577.1-P | Field mustard | mitochondrion | 30.82 | 31.01 |
| CDX79068 | Canola | endoplasmic reticulum, extracellular | 40.25 | 30.92 |
| CDX82831 | Canola | endoplasmic reticulum | 40.25 | 30.92 |
| Bra013532.1-P | Field mustard | endoplasmic reticulum | 40.25 | 30.92 |
| CDY72037 | Canola | mitochondrion | 39.62 | 29.44 |
| KRH49741 | Soybean | mitochondrion | 29.56 | 29.01 |
| AT4G21510.1 | Thale cress | cytosol | 40.88 | 28.89 |
| CDY03828 | Canola | mitochondrion | 40.88 | 28.63 |
| Zm00001d006591_P001 | Maize | plastid | 30.19 | 28.24 |
| CDY40953 | Canola | extracellular, golgi | 24.53 | 20.97 |
Protein Annotations
| EnsemblPlants:Solyc03g006640.2.1 | EnsemblPlantsGene:Solyc03g006640.2 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:F-box-like_dom_sf |
| InterPro:F-box_dom | InterPro:IPR001810 | PANTHER:PTHR34049 | PANTHER:PTHR34049:SF1 | PFscan:PS50181 | SEG:seg |
| SUPFAM:SSF81383 | UniParc:UPI0002767B7E | UniProt:K4BE87 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr3:+:1219448..1220536
Molecular Weight (calculated)
17653.9 Da
IEP (calculated)
7.445
GRAVY (calculated)
-0.431
Length
159 amino acids
Sequence
(BLAST)
(BLAST)
001: MALGNDCENL GLGIVRSTSI GRKRVTLSNS GDVNFVSTTP TKRICSQNSF STDDKSDLET LPKDILIKIV CRADHDDLKS LFHVSRTLRE ASVIAKGWHF
101: DFSTPKKTLP FRDALDVEEF VDNDEEEKAP NAPMQSKMAR SRFNSKKLAG ISVALFTDS
101: DFSTPKKTLP FRDALDVEEF VDNDEEEKAP NAPMQSKMAR SRFNSKKLAG ISVALFTDS
001: MAYLSDGFEM KSTREYERLG LGFVRFTRGL GRKRILISKR APENDSPPVK RPSHETTESC RSLLETLHQD ILIRVLCHVD HEDLATLKRV SKTIRKAVIE
101: AKKSHFDYST PKKRLPFRDA ILILDSNSNS SSQDDEMEPP NAPIRRRFIN RESDLSKISM VLFK
101: AKKSHFDYST PKKRLPFRDA ILILDSNSNS SSQDDEMEPP NAPIRRRFIN RESDLSKISM VLFK
Arabidopsis Description
F-box protein At4g05010 [Source:UniProtKB/Swiss-Prot;Acc:Q9S9T6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.