Factsheet for Solyc02g079150.1.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g113740.2.1
Solyc06g061020.2.1
Solyc08g007120.2.1
Solyc08g077460.2.1
Solyc08g078700.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G61340.1	Solyc03g113740.2.1	AT3G48150.1	21798944
AT1G61340.1	Solyc06g061020.2.1	AT4G17680.1	21798944
AT1G61340.1	Solyc08g007120.2.1	AT4G17680.1	21798944
AT1G61340.1	Solyc08g077460.2.1	AT4G17680.1	21798944
AT1G61340.1	Solyc08g078700.2.1	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400057575	Potato	mitochondrion	48.48	86.02
Solyc10g005480.2.1	Tomato	cytosol, plastid	53.94	50.28
Solyc03g006640.2.1	Tomato	cytosol	46.06	47.8
KRH10756	Soybean	cytosol	32.12	46.49
KRH21550	Soybean	cytosol	23.03	44.19
Bra019871.1-P	Field mustard	mitochondrion	38.18	42.86
CDX97944	Canola	mitochondrion	38.18	42.86
CDY19351	Canola	cytosol, mitochondrion, nucleus	36.97	41.5
KRH21571	Soybean	cytosol	38.18	41.45
KRH49947	Soybean	mitochondrion, plastid	36.97	39.35
KRH41926	Soybean	plastid	36.36	38.71
VIT_00s0181g00080.t01	Wine grape	nucleus	36.97	35.47
CDY16621	Canola	nucleus	35.76	34.71
Bra029548.1-P	Field mustard	nucleus	35.76	34.71
CDY44748	Canola	nucleus	35.15	34.12
AT1G61340.1	Thale cress	mitochondrion, nucleus	38.18	34.05
Bra031435.1-P	Field mustard	cytosol, mitochondrion	36.36	33.33
CDY47573	Canola	cytosol, mitochondrion	36.36	33.33
AT4G05010.1	Thale cress	nucleus	32.73	32.93
GSMUA_Achr9P02840_001	Banana	cytosol	32.73	32.73
CDY15010	Canola	mitochondrion, nucleus	35.76	32.6
CDX90883	Canola	nucleus	34.55	32.02
CDY21323	Canola	nucleus	33.94	31.46
HORVU2Hr1G040830.2	Barley	plastid	30.91	31.1
Bra000811.1-P	Field mustard	nucleus	33.33	30.9
TraesCS2D01G211000.1	Wheat	plastid	30.3	30.49
TraesCS2A01G205100.1	Wheat	plastid	30.3	30.49
Os07t0561300-01	Rice	plastid	30.91	30.36
KXG36477	Sorghum	plastid	30.91	30.0
Zm00001d021779_P001	Maize	cytosol	20.0	30.0
TraesCS2B01G232500.1	Wheat	plastid	29.7	29.88
CDY72037	Canola	mitochondrion	38.18	29.44
Bra038577.1-P	Field mustard	mitochondrion	27.88	29.11
CDX82831	Canola	endoplasmic reticulum	36.36	28.99
CDX79068	Canola	endoplasmic reticulum, extracellular	36.36	28.99
Bra013532.1-P	Field mustard	endoplasmic reticulum	36.36	28.99
GSMUA_Achr6P29300_001	Banana	cytosol	21.82	28.12
KRH49741	Soybean	mitochondrion	27.27	27.78
AT4G21510.1	Thale cress	cytosol	37.58	27.56
CDY03828	Canola	mitochondrion	36.97	26.87
Zm00001d006591_P001	Maize	plastid	27.27	26.47
CDY40953	Canola	extracellular, golgi	26.06	23.12

Protein Annotations

EnsemblPlants:Solyc02g079150.1.1	EnsemblPlantsGene:Solyc02g079150.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR34049	PANTHER:PTHR34049:SF1	PFscan:PS50181	SEG:seg
SUPFAM:SSF81383	UniParc:UPI00027686A1	UniProt:K4B9D9	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr2:-:43757512..43758187

Molecular Weight (calculated)

18658.4 Da

IEP (calculated)

9.193

GRAVY (calculated)

-0.407

Length

165 amino acids

Sequence
(BLAST)

001: MALGKKCGSY GSGLVRSSSF GRKRVIVDVD FSSTIHMKKV CSHNSFFNHE KSPIEDLPQD ILIRVLCGVD HDDLKRLYHV SRAIREATVI AKKLHFEYAT
101: PRKTVGFKNA IDDSGEFNDI EAPNTPRQLK VRKLRLSKKK IADISVALFA SEDDDDNWMA MNAEF

Best Arabidopsis Sequence Match ( AT4G21510.1 )
(BLAST)

001: MIHYLHFIGE FCFSSAVKVV EWFSENLFLK RSTMALSKRG FVMTSNARFH GEEEELELGL GSVRFTRGLG RKRILISSCV RESLSRSAVE IPVVSESPPV
101: KSSLKRQRSR ITIVSSSSSE KSRLECLPQD LLIRVICGVD HEDLKSLKLV SKSIREASLV AKTLHFAYTT PKKTRAFRNS IDLEEVSDSR HQEDDIEPPN
201: APRHYRWTKA KRKEQLSSVS AALFT

Arabidopsis Description

SKIP27F-box protein SKIP27 [Source:UniProtKB/Swiss-Prot;Acc:O65416]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.