CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, mitochondrion

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX97944	Canola	mitochondrion	91.16	91.16
CDY47573	Canola	cytosol, mitochondrion	52.38	42.78
KRH10756	Soybean	cytosol	30.61	39.47
CDY15010	Canola	mitochondrion, nucleus	48.3	39.23
KRH21550	Soybean	cytosol	22.45	38.37
CDY72037	Canola	mitochondrion	55.1	37.85
CDY16621	Canola	nucleus	42.86	37.06
Solyc02g079150.1.1	Tomato	mitochondrion	41.5	36.97
PGSC0003DMT400057575	Potato	mitochondrion	23.13	36.56
PGSC0003DMT400012930	Potato	cytosol	39.46	36.48
CDY44748	Canola	nucleus	41.5	35.88
KRH49947	Soybean	mitochondrion, plastid	37.41	35.48
Solyc10g005480.2.1	Tomato	cytosol, plastid	42.18	35.03
PGSC0003DMT400029256	Potato	plastid	42.18	35.03
KRH21571	Soybean	cytosol	36.05	34.87
KRH41926	Soybean	plastid	36.73	34.84
Solyc03g006640.2.1	Tomato	cytosol	37.41	34.59
CDY03828	Canola	mitochondrion	53.06	34.36
CDX90883	Canola	nucleus	38.78	32.02
GSMUA_Achr9P02840_001	Banana	cytosol	35.37	31.52
CDY21323	Canola	nucleus	38.1	31.46
GSMUA_Achr6P29300_001	Banana	cytosol	27.21	31.25
Zm00001d021779_P001	Maize	cytosol	23.13	30.91
CDX82831	Canola	endoplasmic reticulum	39.46	28.02
CDX79068	Canola	endoplasmic reticulum, extracellular	39.46	28.02
KXG36477	Sorghum	plastid	31.29	27.06
KRH49741	Soybean	mitochondrion	29.25	26.54
HORVU2Hr1G040830.2	Barley	plastid	29.25	26.22
TraesCS2A01G205100.1	Wheat	plastid	29.25	26.22
TraesCS2B01G232500.1	Wheat	plastid	29.25	26.22
TraesCS2D01G211000.1	Wheat	plastid	29.25	26.22
CDY40953	Canola	extracellular, golgi	32.65	25.81
Os07t0561300-01	Rice	plastid	29.25	25.6
Zm00001d006591_P001	Maize	plastid	28.57	24.71

Protein Annotations

EnsemblPlants:CDY19351	EnsemblPlantsGene:GSBRNA2T00008880001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:F-box_dom
InterPro:IPR001810	PANTHER:PTHR34049	PANTHER:PTHR34049:SF1	PFscan:PS50181	ProteinID:CDY19351	ProteinID:CDY19351.1
SEG:seg	UniParc:UPI0004EE2926	UniProt:A0A078G1Z7	MapMan:35.1	:	:

Description

BnaC05g08600DBnaC05g08600D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G1Z7]

Coordinates

chrLK032095:+:192286..193089

Molecular Weight (calculated)

16497.4 Da

IEP (calculated)

10.620

GRAVY (calculated)

-0.388

Length

147 amino acids

Sequence
(BLAST)

001: MTLRKKGLGA VKSSSNTNRK VVGDGGLGLG LDCDKYKKGF GRKRVLIPIG KNRELEALPQ DILIRVICGV EHGDLKQLFN VSKTIREATL IAKKSHFEYI
101: TPRKTLFFRD ELDHLGDETE VPLKKKCRLS RISCEKKASK ISVALFK

Best Arabidopsis Sequence Match ( AT4G35930.2 )
(BLAST)

001: MGKVSPKDLD SKTSVRKKKL KSSSNKYLKP GALVQLCYSK ASAAKSCNEL GKKRVPVFDT KSCNDLGKKR VPVFDIKHAR NNKMAVEQLN SPKSPLMLSP
101: VNVVKRSTLV RPMKFDDLQV ESNNTCKKSP LMLSPMGIVM QNTLLRTPKT PQADPCVSES QLESLPMDLL VKIVCHLHHD QLKAVFHVSQ RIRMATILAR
201: QYHFNYTTPD RSRQEMLRVM TPVPINRWPF RRYMFYFNFY PFEKSIKQLV WLITKPSLI

Arabidopsis Description

FBS4 [Source:UniProtKB/TrEMBL;Acc:A0A178V1Y0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.