CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90883	Canola	nucleus	93.82	93.82
Bra000811.1-P	Field mustard	nucleus	81.46	81.46
AT4G05010.1	Thale cress	nucleus	55.06	59.76
CDY16621	Canola	nucleus	56.74	59.41
CDY44748	Canola	nucleus	55.06	57.65
KRH10756	Soybean	cytosol	24.72	38.6
CDY19351	Canola	cytosol, mitochondrion, nucleus	31.46	38.1
CDX97944	Canola	mitochondrion	30.34	36.73
PGSC0003DMT400057575	Potato	mitochondrion	19.1	36.56
PGSC0003DMT400012930	Potato	cytosol	32.58	36.48
Solyc03g006640.2.1	Tomato	cytosol	32.02	35.85
VIT_00s0181g00080.t01	Wine grape	nucleus	34.27	35.47
Solyc02g079150.1.1	Tomato	mitochondrion	31.46	33.94
PGSC0003DMT400029256	Potato	plastid	33.71	33.9
KRH21550	Soybean	cytosol	16.29	33.72
Solyc10g005480.2.1	Tomato	cytosol, plastid	33.15	33.33
KRH21571	Soybean	cytosol	28.09	32.89
CDY47573	Canola	cytosol, mitochondrion	33.15	32.78
KRH49947	Soybean	mitochondrion, plastid	28.09	32.26
CDY15010	Canola	mitochondrion, nucleus	32.58	32.04
CDX82831	Canola	endoplasmic reticulum	37.08	31.88
KRH41926	Soybean	plastid	26.97	30.97
Zm00001d021779_P001	Maize	cytosol	18.54	30.0
GSMUA_Achr6P29300_001	Banana	cytosol	21.35	29.69
CDX79068	Canola	endoplasmic reticulum, extracellular	34.27	29.47
GSMUA_Achr9P02840_001	Banana	cytosol	26.4	28.48
CDY72037	Canola	mitochondrion	32.02	26.64
CDY03828	Canola	mitochondrion	33.71	26.43
Os07t0561300-01	Rice	plastid	24.72	26.19
TraesCS2D01G211000.1	Wheat	plastid	23.6	25.61
HORVU2Hr1G040830.2	Barley	plastid	23.6	25.61
TraesCS2B01G232500.1	Wheat	plastid	23.6	25.61
TraesCS2A01G205100.1	Wheat	plastid	23.6	25.61
KXG36477	Sorghum	plastid	23.6	24.71
KRH49741	Soybean	mitochondrion	21.35	23.46
CDY40953	Canola	extracellular, golgi	23.03	22.04
Zm00001d006591_P001	Maize	plastid	20.79	21.76

Protein Annotations

EnsemblPlants:CDY21323	EnsemblPlantsGene:GSBRNA2T00015665001	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR34049	PANTHER:PTHR34049:SF1	PFAM:PF00646	ProteinID:CDY21323
ProteinID:CDY21323.1	SUPFAM:SSF81383	UniParc:UPI0004EBC973	UniProt:A0A078G9A3	MapMan:35.1	:

Description

BnaC03g30070DBnaC03g30070D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G9A3]

Coordinates

chrLK032119:+:585742..586984

Molecular Weight (calculated)

20504.5 Da

IEP (calculated)

10.130

GRAVY (calculated)

-0.684

Length

178 amino acids

Sequence
(BLAST)

001: MALPNGEFEI SFSHGKLHGR DEEVVRLGFV RFTRGLRSKR ILFSKSNHET VWNSDKLDSP PVKIPLKRSK TEPNSSVLES LHQDILIRVL CHVDHDDLER
101: LKRVSKTIRN AVFEAKKSHF DYSTPRKTLP FRDPTSILEQ DSSLSDQDEA MEPPNAPVGR RKINRESDLS RISMVLFK

Best Arabidopsis Sequence Match ( AT4G05010.1 )
(BLAST)

001: MAYLSDGFEM KSTREYERLG LGFVRFTRGL GRKRILISKR APENDSPPVK RPSHETTESC RSLLETLHQD ILIRVLCHVD HEDLATLKRV SKTIRKAVIE
101: AKKSHFDYST PKKRLPFRDA ILILDSNSNS SSQDDEMEPP NAPIRRRFIN RESDLSKISM VLFK

Arabidopsis Description

F-box protein At4g05010 [Source:UniProtKB/Swiss-Prot;Acc:Q9S9T6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.