CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH00534
KRH04275
KRH23958
KRH24006
KRH27971
KRH28216
KRH29310
KRH39841
KRH40627
KRH40628
KRH57556
KRH77271
KRH77487

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G61340.1	KRH24006	AT3G48150.1	21798944
AT1G61340.1	KRH27971	AT3G48150.1	21798944
AT1G61340.1	KRH29310	AT3G48150.1	21798944
AT1G61340.1	KRH77487	AT3G48150.1	21798944
AT1G61340.1	KRH00534	AT3G54190.1	21798944
AT1G61340.1	KRH40627	AT3G54190.1	21798944
AT1G61340.1	KRH40628	AT3G54190.1	21798944
AT1G61340.1	KRH04275	AT4G17680.1	21798944
AT1G61340.1	KRH28216	AT4G17680.1	21798944
AT1G61340.1	KRH57556	AT4G17680.1	21798944
AT1G61340.1	KRH77271	AT4G17680.1	21798944
AT1G61340.1	KRH23958	AT4G25200.1	21798944
AT1G61340.1	KRH39841	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH41926	Soybean	plastid	64.81	67.74
KRH49947	Soybean	mitochondrion, plastid	64.2	67.1
KRH21571	Soybean	cytosol	37.04	39.47
KRH10756	Soybean	cytosol	24.07	34.21
GSMUA_Achr6P29300_001	Banana	cytosol	24.69	31.25
Os07t0561300-01	Rice	plastid	32.1	30.95
PGSC0003DMT400029256	Potato	plastid	33.33	30.51
Solyc10g005480.2.1	Tomato	cytosol, plastid	32.72	29.94
HORVU2Hr1G040830.2	Barley	plastid	30.25	29.88
Solyc03g006640.2.1	Tomato	cytosol	29.01	29.56
PGSC0003DMT400012930	Potato	cytosol	29.01	29.56
TraesCS2D01G211000.1	Wheat	plastid	29.63	29.27
TraesCS2B01G232500.1	Wheat	plastid	29.63	29.27
CDX97944	Canola	mitochondrion	26.54	29.25
Bra019871.1-P	Field mustard	mitochondrion	26.54	29.25
CDY19351	Canola	cytosol, mitochondrion, nucleus	26.54	29.25
Zm00001d021779_P001	Maize	cytosol	19.75	29.09
TraesCS2A01G205100.1	Wheat	plastid	29.01	28.66
VIT_00s0181g00080.t01	Wine grape	nucleus	30.25	28.49
KXG36477	Sorghum	plastid	29.63	28.24
AT4G05010.1	Thale cress	nucleus	27.78	27.44
GSMUA_Achr9P02840_001	Banana	cytosol	27.78	27.27
Solyc02g079150.1.1	Tomato	mitochondrion	27.78	27.27
KRH21550	Soybean	cytosol	14.2	26.74
CDY44748	Canola	nucleus	27.16	25.88
CDX82831	Canola	endoplasmic reticulum	32.72	25.6
CDY16621	Canola	nucleus	26.54	25.29
Bra029548.1-P	Field mustard	nucleus	26.54	25.29
AT4G21510.1	Thale cress	cytosol	33.95	24.44
Bra013532.1-P	Field mustard	endoplasmic reticulum	30.86	24.15
CDX79068	Canola	endoplasmic reticulum, extracellular	30.86	24.15
PGSC0003DMT400057575	Potato	mitochondrion	12.96	22.58
AT1G61340.1	Thale cress	mitochondrion, nucleus	25.31	22.16
CDY15010	Canola	mitochondrion, nucleus	24.69	22.1
Bra000811.1-P	Field mustard	nucleus	24.07	21.91
Zm00001d006591_P001	Maize	plastid	22.84	21.76
Bra031435.1-P	Field mustard	cytosol, mitochondrion	24.07	21.67
CDY47573	Canola	cytosol, mitochondrion	24.07	21.67
CDY21323	Canola	nucleus	23.46	21.35
Bra038577.1-P	Field mustard	mitochondrion	20.37	20.89
CDX90883	Canola	nucleus	22.84	20.79
CDY72037	Canola	mitochondrion	25.93	19.63
CDY03828	Canola	mitochondrion	24.69	17.62
CDY40953	Canola	extracellular, golgi	18.52	16.13

Protein Annotations

EMBL:ACUP02004627	EnsemblPlants:KRH49741	EnsemblPlantsGene:GLYMA_07G175900	PANTHER:PTHR34049	PANTHER:PTHR34049:SF1	ProteinID:KRH49741
ProteinID:KRH49741.1	UniParc:UPI0006EDCFF9	UniProt:A0A0R0J4I2	MapMan:35.2	:	:

Description

hypothetical protein

Coordinates

chr7:+:32579850..32581223

Molecular Weight (calculated)

18381.5 Da

IEP (calculated)

10.390

GRAVY (calculated)

-0.199

Length

162 amino acids

Sequence
(BLAST)

001: MKLLKTNLNM ALGFEGYSYT TTLGRKRVVL LHNEASNLNY NTLVNPLKRR MSSEKFTFDS KRSRLEAFPV DVLIRVLYGV GHEDLEQLCW GLLLLAEVAR
101: RMHFEYSTPK NITLAIPKSF DIEGATRLEE INTPKAPFRK PKLKPIGKNL ASIPVALFAS TN

Best Arabidopsis Sequence Match ( AT1G61340.2 )
(BLAST)

001: MALGKKRIVT QKPNLRQRRD VDNGGLGLGL EFVQYKRGFG RKRILISSGD EMEDSIFTSP VGKKLCDDKT TSVAEGQSRE LEDLPLDILV RIICGVEHED
101: LKQLFHVSKT IREATMIAKQ SHFAYSTPRK TSVFHHGRFG WDKPFDVEDD DEEIEAPGAP LQKRYRLSRI NRNKDDSGVS VALFH

Arabidopsis Description

F-box protein At1g61340 [Source:UniProtKB/Swiss-Prot;Acc:Q8GX77]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.