Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- nucleus 2
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra031435.1-P | Field mustard | cytosol, mitochondrion | 100.0 | 100.0 |
| CDY03828 | Canola | mitochondrion | 98.33 | 77.97 |
| CDY15010 | Canola | mitochondrion, nucleus | 75.56 | 75.14 |
| AT1G61340.1 | Thale cress | mitochondrion, nucleus | 70.56 | 68.65 |
| CDY72037 | Canola | mitochondrion | 72.78 | 61.22 |
| CDY19351 | Canola | cytosol, mitochondrion, nucleus | 42.78 | 52.38 |
| CDX97944 | Canola | mitochondrion | 42.22 | 51.7 |
| PGSC0003DMT400012930 | Potato | cytosol | 36.67 | 41.51 |
| PGSC0003DMT400057575 | Potato | mitochondrion | 21.11 | 40.86 |
| Solyc03g006640.2.1 | Tomato | cytosol | 35.56 | 40.25 |
| KRH10756 | Soybean | cytosol | 24.44 | 38.6 |
| PGSC0003DMT400029256 | Potato | plastid | 36.67 | 37.29 |
| KRH21550 | Soybean | cytosol | 17.78 | 37.21 |
| KRH21571 | Soybean | cytosol | 31.11 | 36.84 |
| Solyc10g005480.2.1 | Tomato | cytosol, plastid | 36.11 | 36.72 |
| GSMUA_Achr6P29300_001 | Banana | cytosol | 26.11 | 36.72 |
| Solyc02g079150.1.1 | Tomato | mitochondrion | 33.33 | 36.36 |
| CDY16621 | Canola | nucleus | 32.78 | 34.71 |
| CDY40953 | Canola | extracellular, golgi | 35.56 | 34.41 |
| KRH41926 | Soybean | plastid | 29.44 | 34.19 |
| KRH49947 | Soybean | mitochondrion, plastid | 29.44 | 34.19 |
| GSMUA_Achr9P02840_001 | Banana | cytosol | 31.11 | 33.94 |
| CDX90883 | Canola | nucleus | 33.33 | 33.71 |
| CDY44748 | Canola | nucleus | 31.67 | 33.53 |
| CDY21323 | Canola | nucleus | 32.78 | 33.15 |
| CDX79068 | Canola | endoplasmic reticulum, extracellular | 35.56 | 30.92 |
| Zm00001d021779_P001 | Maize | cytosol | 18.89 | 30.91 |
| TraesCS2A01G205100.1 | Wheat | plastid | 27.78 | 30.49 |
| CDX82831 | Canola | endoplasmic reticulum | 34.44 | 29.95 |
| TraesCS2B01G232500.1 | Wheat | plastid | 27.22 | 29.88 |
| HORVU2Hr1G040830.2 | Barley | plastid | 27.22 | 29.88 |
| TraesCS2D01G211000.1 | Wheat | plastid | 26.67 | 29.27 |
| KXG36477 | Sorghum | plastid | 26.67 | 28.24 |
| Zm00001d006591_P001 | Maize | plastid | 25.56 | 27.06 |
| Os07t0561300-01 | Rice | plastid | 23.89 | 25.6 |
| KRH49741 | Soybean | mitochondrion | 21.67 | 24.07 |
Protein Annotations
| EnsemblPlants:CDY47573 | EnsemblPlantsGene:GSBRNA2T00087667001 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:F-box_dom |
| InterPro:IPR001810 | PANTHER:PTHR34049 | PANTHER:PTHR34049:SF1 | PFscan:PS50181 | ProteinID:CDY47573 | ProteinID:CDY47573.1 |
| SEG:seg | UniParc:UPI0002545035 | UniProt:A0A078IEL4 | MapMan:35.1 | : | : |
Description
BnaA01g22590DBnaA01g22590D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IEL4]
Coordinates
chrLK032723:+:15961..17529
Molecular Weight (calculated)
20197.5 Da
IEP (calculated)
10.343
GRAVY (calculated)
-0.446
Length
180 amino acids
Sequence
(BLAST)
(BLAST)
001: MALGKKRIVA QKSNLKQRRG VEEGGLGIEL ELVQYKRGFG RKRVLISETR DSVFTSPVGT ISSKKLCDKT LGTGGQSREL EDLPLDILVK IICGVEHEDL
101: KQLFHVSKTI REATLIAKQS HFAYSTPRKT LIFQLGRYGL DKPFDLGEDK IEAPAAPLQK RYRRINRNED NSGVSVALFN
101: KQLFHVSKTI REATLIAKQS HFAYSTPRKT LIFQLGRYGL DKPFDLGEDK IEAPAAPLQK RYRRINRNED NSGVSVALFN
001: MALGKKRIVT QKPNLRQRRD VDNGGLGLGL EFVQYKRGFG RKRILISSGD EMEDSIFTSP VGKKLCDDKT TSVAEGQSRE LEDLPLDILV RIICGVEHED
101: LKQLFHVSKT IREATMIAKQ SHFAYSTPRK TSVFHHGRFG WDKPFDVEDD DEEIEAPGAP LQKRYRLSRI NRNKDDSGVS VALFH
101: LKQLFHVSKT IREATMIAKQ SHFAYSTPRK TSVFHHGRFG WDKPFDVEDD DEEIEAPGAP LQKRYRLSRI NRNKDDSGVS VALFH
Arabidopsis Description
F-box protein At1g61340 [Source:UniProtKB/Swiss-Prot;Acc:Q8GX77]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.