Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- mitochondrion 3
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY47573 | Canola | cytosol, mitochondrion | 75.14 | 75.56 |
| AT1G61340.1 | Thale cress | mitochondrion, nucleus | 69.06 | 67.57 |
| CDY72037 | Canola | mitochondrion | 76.8 | 64.95 |
| CDY03828 | Canola | mitochondrion | 75.14 | 59.91 |
| CDY19351 | Canola | cytosol, mitochondrion, nucleus | 39.23 | 48.3 |
| CDX97944 | Canola | mitochondrion | 38.67 | 47.62 |
| CDY40953 | Canola | extracellular, golgi | 40.88 | 39.78 |
| PGSC0003DMT400057575 | Potato | mitochondrion | 19.89 | 38.71 |
| KRH10756 | Soybean | cytosol | 24.31 | 38.6 |
| KRH21550 | Soybean | cytosol | 18.23 | 38.37 |
| Solyc03g006640.2.1 | Tomato | cytosol | 33.7 | 38.36 |
| PGSC0003DMT400012930 | Potato | cytosol | 33.15 | 37.74 |
| GSMUA_Achr6P29300_001 | Banana | cytosol | 26.52 | 37.5 |
| GSMUA_Achr9P02840_001 | Banana | cytosol | 32.6 | 35.76 |
| Solyc02g079150.1.1 | Tomato | mitochondrion | 32.6 | 35.76 |
| Solyc10g005480.2.1 | Tomato | cytosol, plastid | 34.81 | 35.59 |
| KRH21571 | Soybean | cytosol | 29.83 | 35.53 |
| KRH49947 | Soybean | mitochondrion, plastid | 30.39 | 35.48 |
| PGSC0003DMT400029256 | Potato | plastid | 34.25 | 35.03 |
| KRH41926 | Soybean | plastid | 29.83 | 34.84 |
| CDY16621 | Canola | nucleus | 32.6 | 34.71 |
| CDY44748 | Canola | nucleus | 32.04 | 34.12 |
| CDX90883 | Canola | nucleus | 33.15 | 33.71 |
| CDY21323 | Canola | nucleus | 32.04 | 32.58 |
| TraesCS2A01G205100.1 | Wheat | plastid | 29.28 | 32.32 |
| Zm00001d021779_P001 | Maize | cytosol | 19.34 | 31.82 |
| HORVU2Hr1G040830.2 | Barley | plastid | 28.73 | 31.71 |
| TraesCS2B01G232500.1 | Wheat | plastid | 28.73 | 31.71 |
| TraesCS2D01G211000.1 | Wheat | plastid | 28.73 | 31.71 |
| KXG36477 | Sorghum | plastid | 29.28 | 31.18 |
| Zm00001d006591_P001 | Maize | plastid | 28.73 | 30.59 |
| CDX79068 | Canola | endoplasmic reticulum, extracellular | 34.25 | 29.95 |
| CDX82831 | Canola | endoplasmic reticulum | 33.7 | 29.47 |
| Os07t0561300-01 | Rice | plastid | 25.41 | 27.38 |
| KRH49741 | Soybean | mitochondrion | 22.1 | 24.69 |
Protein Annotations
| EnsemblPlants:CDY15010 | EnsemblPlantsGene:GSBRNA2T00085050001 | PANTHER:PTHR34049 | PANTHER:PTHR34049:SF1 | ProteinID:CDY15010 | ProteinID:CDY15010.1 |
| SEG:seg | UniParc:UPI0004EB970B | UniProt:A0A078FKN4 | MapMan:35.1 | : | : |
Description
BnaCnng04130DBnaCnng04130D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FKN4]
Coordinates
chrLK032050:+:250192..251695
Molecular Weight (calculated)
20541.7 Da
IEP (calculated)
10.067
GRAVY (calculated)
-0.527
Length
181 amino acids
Sequence
(BLAST)
(BLAST)
001: MALGKKRIVA QRSNLKHRRG VEEGGLGLEL ELVQYKKVFG RKRILVSDTG DSIFTSPVRK ISSKKLCDKA PSASCQSPEL EDLHLDILVR IICRVEHEDL
101: KQLFHVSKTV REATLIAKQS HFAYSTPRKT SVFQHRRFSL DKPFGLGDGD DYEIEAPGAP LQKRYRYRNE DDSGVSVALF K
101: KQLFHVSKTV REATLIAKQS HFAYSTPRKT SVFQHRRFSL DKPFGLGDGD DYEIEAPGAP LQKRYRYRNE DDSGVSVALF K
001: MALGKKRIVT QKPNLRQRRD VDNGGLGLGL EFVQYKRGFG RKRILISSGD EMEDSIFTSP VGKKLCDDKT TSVAEGQSRE LEDLPLDILV RIICGVEHED
101: LKQLFHVSKT IREATMIAKQ SHFAYSTPRK TSVFHHGRFG WDKPFDVEDD DEEIEAPGAP LQKRYRLSRI NRNKDDSGVS VALFH
101: LKQLFHVSKT IREATMIAKQ SHFAYSTPRK TSVFHHGRFG WDKPFDVEDD DEEIEAPGAP LQKRYRLSRI NRNKDDSGVS VALFH
Arabidopsis Description
F-box protein At1g61340 [Source:UniProtKB/Swiss-Prot;Acc:Q8GX77]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.