Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra031435.1-P | Field mustard | cytosol, mitochondrion | 77.97 | 98.33 |
| CDY47573 | Canola | cytosol, mitochondrion | 77.97 | 98.33 |
| CDY15010 | Canola | mitochondrion, nucleus | 59.91 | 75.14 |
| AT1G61340.1 | Thale cress | mitochondrion, nucleus | 57.27 | 70.27 |
| CDY72037 | Canola | mitochondrion | 58.59 | 62.15 |
| CDY19351 | Canola | cytosol, mitochondrion, nucleus | 34.36 | 53.06 |
| CDX97944 | Canola | mitochondrion | 33.92 | 52.38 |
| PGSC0003DMT400012930 | Potato | cytosol | 29.52 | 42.14 |
| PGSC0003DMT400057575 | Potato | mitochondrion | 17.18 | 41.94 |
| KRH10756 | Soybean | cytosol | 20.7 | 41.23 |
| Solyc03g006640.2.1 | Tomato | cytosol | 28.63 | 40.88 |
| KRH21550 | Soybean | cytosol | 14.54 | 38.37 |
| KRH21571 | Soybean | cytosol | 25.55 | 38.16 |
| PGSC0003DMT400029256 | Potato | plastid | 29.52 | 37.85 |
| GSMUA_Achr6P29300_001 | Banana | cytosol | 21.15 | 37.5 |
| Solyc10g005480.2.1 | Tomato | cytosol, plastid | 29.07 | 37.29 |
| Solyc02g079150.1.1 | Tomato | mitochondrion | 26.87 | 36.97 |
| CDY40953 | Canola | extracellular, golgi | 29.07 | 35.48 |
| GSMUA_Achr9P02840_001 | Banana | cytosol | 25.55 | 35.15 |
| KRH41926 | Soybean | plastid | 23.79 | 34.84 |
| KRH49947 | Soybean | mitochondrion, plastid | 23.79 | 34.84 |
| CDY16621 | Canola | nucleus | 25.99 | 34.71 |
| CDX90883 | Canola | nucleus | 26.87 | 34.27 |
| CDY21323 | Canola | nucleus | 26.43 | 33.71 |
| CDY44748 | Canola | nucleus | 25.11 | 33.53 |
| Zm00001d021779_P001 | Maize | cytosol | 15.86 | 32.73 |
| CDX79068 | Canola | endoplasmic reticulum, extracellular | 28.63 | 31.4 |
| TraesCS2A01G205100.1 | Wheat | plastid | 22.47 | 31.1 |
| TraesCS2B01G232500.1 | Wheat | plastid | 22.03 | 30.49 |
| HORVU2Hr1G040830.2 | Barley | plastid | 22.03 | 30.49 |
| CDX82831 | Canola | endoplasmic reticulum | 27.75 | 30.43 |
| TraesCS2D01G211000.1 | Wheat | plastid | 21.59 | 29.88 |
| KXG36477 | Sorghum | plastid | 22.03 | 29.41 |
| Zm00001d006591_P001 | Maize | plastid | 20.7 | 27.65 |
| Os07t0561300-01 | Rice | plastid | 19.38 | 26.19 |
| KRH49741 | Soybean | mitochondrion | 17.62 | 24.69 |
Protein Annotations
| EnsemblPlants:CDY03828 | EnsemblPlantsGene:GSBRNA2T00117276001 | PANTHER:PTHR34049 | PANTHER:PTHR34049:SF1 | ProteinID:CDY03828 | ProteinID:CDY03828.1 |
| SEG:seg | UniParc:UPI0004EE0533 | MapMan:35.1 | : | : | : |
Description
BnaC01g29450D
Coordinates
chrLK031946:+:956518..958184
Molecular Weight (calculated)
25997.7 Da
IEP (calculated)
9.719
GRAVY (calculated)
-0.130
Length
227 amino acids
Sequence
(BLAST)
(BLAST)
001: MALGKKRIVT QKSNLKQRRG VEEGGLGIEL ELVQYKRGFG RKRVLISETR DSVFTSPVGT ISSKKLCDKT LGTGGQSREL EDLPLDILFV EISCYFTSFN
101: LIELKIKLLF VDEVFNFINN WLLSLYDMWV LLIFLVKIIC GVEHEDLKQL FHVSKTIREA TLIAKQSHFA YSTPRKTLVF QLGRYGLDKP FDFGEDKIEA
201: PAAPLQKRYR RINRNEDNSG VSVALFN
101: LIELKIKLLF VDEVFNFINN WLLSLYDMWV LLIFLVKIIC GVEHEDLKQL FHVSKTIREA TLIAKQSHFA YSTPRKTLVF QLGRYGLDKP FDFGEDKIEA
201: PAAPLQKRYR RINRNEDNSG VSVALFN
001: MALGKKRIVT QKPNLRQRRD VDNGGLGLGL EFVQYKRGFG RKRILISSGD EMEDSIFTSP VGKKLCDDKT TSVAEGQSRE LEDLPLDILV RIICGVEHED
101: LKQLFHVSKT IREATMIAKQ SHFAYSTPRK TSVFHHGRFG WDKPFDVEDD DEEIEAPGAP LQKRYRLSRI NRNKDDSGVS VALFH
101: LKQLFHVSKT IREATMIAKQ SHFAYSTPRK TSVFHHGRFG WDKPFDVEDD DEEIEAPGAP LQKRYRLSRI NRNKDDSGVS VALFH
Arabidopsis Description
F-box protein At1g61340 [Source:UniProtKB/Swiss-Prot;Acc:Q8GX77]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.