Factsheet for PGSC0003DMT400057575

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400004642
PGSC0003DMT400012249
PGSC0003DMT400052841
PGSC0003DMT400063189
PGSC0003DMT400068387

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G61340.1	PGSC0003DMT400063189	AT3G48150.1	21798944
AT1G61340.1	PGSC0003DMT400004642	AT4G17680.1	21798944
AT1G61340.1	PGSC0003DMT400052841	AT4G17680.1	21798944
AT1G61340.1	PGSC0003DMT400068387	AT4G17680.1	21798944
AT1G61340.1	PGSC0003DMT400012249	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g079150.1.1	Tomato	mitochondrion	86.02	48.48
PGSC0003DMT400012930	Potato	cytosol	54.84	32.08
PGSC0003DMT400029256	Potato	plastid	59.14	31.07
KRH21550	Soybean	cytosol	26.88	29.07
KRH10756	Soybean	cytosol	31.18	25.44
Bra019871.1-P	Field mustard	mitochondrion	37.63	23.81
CDX97944	Canola	mitochondrion	37.63	23.81
KRH41926	Soybean	plastid	38.71	23.23
CDY19351	Canola	cytosol, mitochondrion, nucleus	36.56	23.13
KRH21571	Soybean	cytosol	36.56	22.37
KRH49947	Soybean	mitochondrion, plastid	36.56	21.94
CDY16621	Canola	nucleus	39.78	21.76
Bra029548.1-P	Field mustard	nucleus	39.78	21.76
CDY44748	Canola	nucleus	39.78	21.76
VIT_00s0181g00080.t01	Wine grape	nucleus	39.78	21.51
Bra031435.1-P	Field mustard	cytosol, mitochondrion	40.86	21.11
CDY47573	Canola	cytosol, mitochondrion	40.86	21.11
AT1G61340.1	Thale cress	mitochondrion, nucleus	41.94	21.08
Bra000811.1-P	Field mustard	nucleus	38.71	20.22
AT4G05010.1	Thale cress	nucleus	35.48	20.12
CDY15010	Canola	mitochondrion, nucleus	38.71	19.89
CDX90883	Canola	nucleus	37.63	19.66
CDY72037	Canola	mitochondrion	45.16	19.63
GSMUA_Achr9P02840_001	Banana	cytosol	34.41	19.39
CDY21323	Canola	nucleus	36.56	19.1
Os07t0561300-01	Rice	plastid	33.33	18.45
CDX79068	Canola	endoplasmic reticulum, extracellular	40.86	18.36
Bra013532.1-P	Field mustard	endoplasmic reticulum	40.86	18.36
KXG36477	Sorghum	plastid	33.33	18.24
CDX82831	Canola	endoplasmic reticulum	39.78	17.87
CDY03828	Canola	mitochondrion	41.94	17.18
HORVU2Hr1G040830.2	Barley	plastid	30.11	17.07
TraesCS2D01G211000.1	Wheat	plastid	30.11	17.07
TraesCS2B01G232500.1	Wheat	plastid	30.11	17.07
TraesCS2A01G205100.1	Wheat	plastid	30.11	17.07
AT4G21510.1	Thale cress	cytosol	39.78	16.44
Zm00001d006591_P001	Maize	plastid	27.96	15.29
Bra038577.1-P	Field mustard	mitochondrion	25.81	15.19
GSMUA_Achr6P29300_001	Banana	cytosol	20.43	14.84
Zm00001d021779_P001	Maize	cytosol	17.2	14.55
CDY40953	Canola	extracellular, golgi	29.03	14.52
KRH49741	Soybean	mitochondrion	22.58	12.96

Protein Annotations

EnsemblPlants:PGSC0003DMT400057575	EnsemblPlantsGene:PGSC0003DMG400022356	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR34049	PANTHER:PTHR34049:SF1	PFscan:PS50181	PGSC:PGSC0003DMG400022356
SUPFAM:SSF81383	UniParc:UPI000294ED9D	UniProt:M1C1A9	MapMan:35.2	:	:

Description

F-box family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400022356]

Coordinates

chr2:-:34851496..34852803

Molecular Weight (calculated)

10532.8 Da

IEP (calculated)

9.758

GRAVY (calculated)

-0.108

Length

93 amino acids

Sequence
(BLAST)

1: MALGKKCGSY GSGLVRSSSF GRKRVILDVD FSPTIHMKKV CSHNSLFNYD KSPIEDLPQD ILIRIVCGVD HDDLKRLFRV SRAIREAVSW GFF

Best Arabidopsis Sequence Match ( AT4G21510.2 )
(BLAST)

001: MIHYLHFIGE FCFSSAVKVV EWFSENLFLK RSTMALSKRG FVMTSNARFH GEEEELELGL GSVRFTRGLG RKRILISSCV RESLSRSAVE IPVVSESPPV
101: KSSLKRQRSR ITIVSSSSSE KSRLECLPQD LLIRVICGVD HEDLKSLKLV SKSIREAVSS IFSHHLSFD

Arabidopsis Description

SKIP27F-box protein SKIP27 [Source:UniProtKB/Swiss-Prot;Acc:O65416]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.