Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_18s0001g14860.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G21510.1 | VIT_18s0001g14860.t01 | AT5G42190.1 | 12795696 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g006640.2.1 | Tomato | cytosol | 43.02 | 46.54 |
| KRH10756 | Soybean | cytosol | 29.65 | 44.74 |
| PGSC0003DMT400012930 | Potato | cytosol | 41.28 | 44.65 |
| GSMUA_Achr6P29300_001 | Banana | cytosol | 33.14 | 44.53 |
| KRH21550 | Soybean | cytosol | 20.93 | 41.86 |
| CDY44748 | Canola | nucleus | 41.28 | 41.76 |
| KRH49947 | Soybean | mitochondrion, plastid | 37.21 | 41.29 |
| Bra029548.1-P | Field mustard | nucleus | 40.7 | 41.18 |
| CDY16621 | Canola | nucleus | 40.7 | 41.18 |
| Zm00001d021779_P001 | Maize | cytosol | 26.16 | 40.91 |
| PGSC0003DMT400029256 | Potato | plastid | 41.86 | 40.68 |
| GSMUA_Achr9P02840_001 | Banana | cytosol | 38.95 | 40.61 |
| KRH21571 | Soybean | cytosol | 35.47 | 40.13 |
| KRH41926 | Soybean | plastid | 36.05 | 40.0 |
| PGSC0003DMT400057575 | Potato | mitochondrion | 21.51 | 39.78 |
| Solyc10g005480.2.1 | Tomato | cytosol, plastid | 40.7 | 39.55 |
| AT4G05010.1 | Thale cress | nucleus | 37.21 | 39.02 |
| Bra000811.1-P | Field mustard | nucleus | 38.37 | 37.08 |
| Solyc02g079150.1.1 | Tomato | mitochondrion | 35.47 | 36.97 |
| TraesCS2A01G205100.1 | Wheat | plastid | 34.3 | 35.98 |
| KXG36477 | Sorghum | plastid | 34.88 | 35.29 |
| TraesCS2D01G211000.1 | Wheat | plastid | 33.14 | 34.76 |
| TraesCS2B01G232500.1 | Wheat | plastid | 33.14 | 34.76 |
| HORVU2Hr1G040830.2 | Barley | plastid | 33.14 | 34.76 |
| CDY21323 | Canola | nucleus | 35.47 | 34.27 |
| CDX90883 | Canola | nucleus | 35.47 | 34.27 |
| Os07t0561300-01 | Rice | plastid | 31.4 | 32.14 |
| Bra013532.1-P | Field mustard | endoplasmic reticulum | 37.79 | 31.4 |
| CDX79068 | Canola | endoplasmic reticulum, extracellular | 37.79 | 31.4 |
| CDX82831 | Canola | endoplasmic reticulum | 37.79 | 31.4 |
| AT4G21510.1 | Thale cress | cytosol | 40.7 | 31.11 |
| KRH49741 | Soybean | mitochondrion | 28.49 | 30.25 |
| Zm00001d006591_P001 | Maize | plastid | 29.65 | 30.0 |
Protein Annotations
| ArrayExpress:VIT_00s0181g00080 | EMBL:FN595252 | EnsemblPlants:VIT_00s0181g00080.t01 | EnsemblPlantsGene:VIT_00s0181g00080 | EntrezGene:100246508 | EntrezGene:LOC100246508 |
| PANTHER:PTHR34049 | PANTHER:PTHR34049:SF1 | ProteinID:CCB48273 | ProteinID:CCB48273.1 | RefSeq:XP_002274518 | RefSeq:XP_002274518.1 |
| RefSeq:XP_003634996 | RefSeq:XP_003634996.1 | SEG:seg | TIGR:TC56952 | UniParc:UPI00019861A8 | UniProt:F6H7T1 |
| wikigene:100246508 | wikigene:LOC100246508 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chrUn:-:7714038..7715390
Molecular Weight (calculated)
19181.9 Da
IEP (calculated)
9.887
GRAVY (calculated)
-0.533
Length
172 amino acids
Sequence
(BLAST)
(BLAST)
001: MALGRRHGSQ MKGGDEELGL GFVPVTRSLS RKRILVSSNT ESSSPSSVLR TPLKRRCGEM VEEKAEKSML EAMPQDILIR ILCGVDHDDL KQLFHVSNTI
101: RDATLIAKKS HFAFSTPSKV QTFRSPLDPE ESSGFDDLQT PDAPKQSRHF RSRLRGRRLS GIAIALFSSD EE
101: RDATLIAKKS HFAFSTPSKV QTFRSPLDPE ESSGFDDLQT PDAPKQSRHF RSRLRGRRLS GIAIALFSSD EE
001: MIHYLHFIGE FCFSSAVKVV EWFSENLFLK RSTMALSKRG FVMTSNARFH GEEEELELGL GSVRFTRGLG RKRILISSCV RESLSRSAVE IPVVSESPPV
101: KSSLKRQRSR ITIVSSSSSE KSRLECLPQD LLIRVICGVD HEDLKSLKLV SKSIREASLV AKTLHFAYTT PKKTRAFRNS IDLEEVSDSR HQEDDIEPPN
201: APRHYRWTKA KRKEQLSSVS AALFT
101: KSSLKRQRSR ITIVSSSSSE KSRLECLPQD LLIRVICGVD HEDLKSLKLV SKSIREASLV AKTLHFAYTT PKKTRAFRNS IDLEEVSDSR HQEDDIEPPN
201: APRHYRWTKA KRKEQLSSVS AALFT
Arabidopsis Description
SKIP27F-box protein SKIP27 [Source:UniProtKB/Swiss-Prot;Acc:O65416]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.