CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY44748	Canola	nucleus	97.06	97.06
AT4G05010.1	Thale cress	nucleus	65.29	67.68
CDX90883	Canola	nucleus	60.59	57.87
CDY21323	Canola	nucleus	59.41	56.74
CDY19351	Canola	cytosol, mitochondrion, nucleus	37.06	42.86
VIT_00s0181g00080.t01	Wine grape	nucleus	41.18	40.7
CDX97944	Canola	mitochondrion	34.71	40.14
PGSC0003DMT400057575	Potato	mitochondrion	21.76	39.78
KRH49947	Soybean	mitochondrion, plastid	35.29	38.71
KRH41926	Soybean	plastid	35.29	38.71
KRH10756	Soybean	cytosol	25.88	38.6
Solyc03g006640.2.1	Tomato	cytosol	35.29	37.74
KRH21571	Soybean	cytosol	32.94	36.84
PGSC0003DMT400012930	Potato	cytosol	33.53	35.85
Solyc02g079150.1.1	Tomato	mitochondrion	34.71	35.76
KRH21550	Soybean	cytosol	17.65	34.88
PGSC0003DMT400029256	Potato	plastid	35.29	33.9
Solyc10g005480.2.1	Tomato	cytosol, plastid	34.71	33.33
CDY47573	Canola	cytosol, mitochondrion	34.71	32.78
CDY15010	Canola	mitochondrion, nucleus	34.71	32.6
CDX79068	Canola	endoplasmic reticulum, extracellular	39.41	32.37
CDX82831	Canola	endoplasmic reticulum	39.41	32.37
GSMUA_Achr9P02840_001	Banana	cytosol	30.59	31.52
Zm00001d021779_P001	Maize	cytosol	19.41	30.0
GSMUA_Achr6P29300_001	Banana	cytosol	21.76	28.91
Os07t0561300-01	Rice	plastid	26.47	26.79
CDY72037	Canola	mitochondrion	33.53	26.64
KRH49741	Soybean	mitochondrion	25.29	26.54
CDY03828	Canola	mitochondrion	34.71	25.99
KXG36477	Sorghum	plastid	25.88	25.88
HORVU2Hr1G040830.2	Barley	plastid	24.71	25.61
TraesCS2A01G205100.1	Wheat	plastid	24.71	25.61
TraesCS2B01G232500.1	Wheat	plastid	24.71	25.61
TraesCS2D01G211000.1	Wheat	plastid	24.71	25.61
CDY40953	Canola	extracellular, golgi	25.29	23.12
Zm00001d006591_P001	Maize	plastid	22.35	22.35

Protein Annotations

Gene3D:1.20.1280.50	MapMan:35.1	UniProt:A0A078FUF8	EnsemblPlants:CDY16621	ProteinID:CDY16621	ProteinID:CDY16621.1
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00094451001
InterPro:IPR001810	PFAM:PF00646	PFscan:PS50181	PANTHER:PTHR34049	PANTHER:PTHR34049:SF1	SUPFAM:SSF81383
UniParc:UPI0004EE3DF1	SEG:seg	:	:	:	:

Description

BnaA09g19990DBnaA09g19990D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FUF8]

Coordinates

chrLK032066:-:51314..52391

Molecular Weight (calculated)

19258.7 Da

IEP (calculated)

10.261

GRAVY (calculated)

-0.795

Length

170 amino acids

Sequence
(BLAST)

001: MAFSNRGFSK FHGKEEASGL GFVRITRGLG RKRILISKSN QENVSNSDQN LLKRSKSETT ESNNSVLESL HQDILIRVLC HVDHDDLARL KRVSKTIRNA
101: VLEAKKSHFD YSTPKKTLSF RDPLVTLNED SNSNSTSDQD DEIEPPNAPT RRKNISRESD LSKISMVLFK

Best Arabidopsis Sequence Match ( AT4G05010.1 )
(BLAST)

001: MAYLSDGFEM KSTREYERLG LGFVRFTRGL GRKRILISKR APENDSPPVK RPSHETTESC RSLLETLHQD ILIRVLCHVD HEDLATLKRV SKTIRKAVIE
101: AKKSHFDYST PKKRLPFRDA ILILDSNSNS SSQDDEMEPP NAPIRRRFIN RESDLSKISM VLFK

Arabidopsis Description

F-box protein At4g05010 [Source:UniProtKB/Swiss-Prot;Acc:Q9S9T6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.