Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g006640.2.1 | Tomato | cytosol | 89.94 | 89.94 |
| PGSC0003DMT400057575 | Potato | mitochondrion | 32.08 | 54.84 |
| PGSC0003DMT400029256 | Potato | plastid | 59.12 | 53.11 |
| KRH10756 | Soybean | cytosol | 30.82 | 42.98 |
| VIT_00s0181g00080.t01 | Wine grape | nucleus | 44.65 | 41.28 |
| KRH21571 | Soybean | cytosol | 38.36 | 40.13 |
| CDY19351 | Canola | cytosol, mitochondrion, nucleus | 36.48 | 39.46 |
| Bra019871.1-P | Field mustard | mitochondrion | 35.85 | 38.78 |
| CDX97944 | Canola | mitochondrion | 35.85 | 38.78 |
| KRH41926 | Soybean | plastid | 37.74 | 38.71 |
| KRH49947 | Soybean | mitochondrion, plastid | 37.11 | 38.06 |
| GSMUA_Achr6P29300_001 | Banana | cytosol | 30.19 | 37.5 |
| CDY47573 | Canola | cytosol, mitochondrion | 41.51 | 36.67 |
| Bra031435.1-P | Field mustard | cytosol, mitochondrion | 41.51 | 36.67 |
| GSMUA_Achr9P02840_001 | Banana | cytosol | 37.74 | 36.36 |
| AT4G05010.1 | Thale cress | nucleus | 37.11 | 35.98 |
| AT1G61340.1 | Thale cress | mitochondrion, nucleus | 41.51 | 35.68 |
| Zm00001d021779_P001 | Maize | cytosol | 24.53 | 35.45 |
| KRH21550 | Soybean | cytosol | 18.87 | 34.88 |
| Bra000811.1-P | Field mustard | nucleus | 37.74 | 33.71 |
| CDY44748 | Canola | nucleus | 35.85 | 33.53 |
| CDY16621 | Canola | nucleus | 35.85 | 33.53 |
| Bra029548.1-P | Field mustard | nucleus | 35.85 | 33.53 |
| CDY15010 | Canola | mitochondrion, nucleus | 37.74 | 33.15 |
| CDY21323 | Canola | nucleus | 36.48 | 32.58 |
| Os07t0561300-01 | Rice | plastid | 33.96 | 32.14 |
| CDX90883 | Canola | nucleus | 35.85 | 32.02 |
| CDX82831 | Canola | endoplasmic reticulum | 40.88 | 31.4 |
| KXG36477 | Sorghum | plastid | 33.33 | 31.18 |
| HORVU2Hr1G040830.2 | Barley | plastid | 32.08 | 31.1 |
| TraesCS2D01G211000.1 | Wheat | plastid | 32.08 | 31.1 |
| TraesCS2A01G205100.1 | Wheat | plastid | 32.08 | 31.1 |
| CDX79068 | Canola | endoplasmic reticulum, extracellular | 40.25 | 30.92 |
| Bra013532.1-P | Field mustard | endoplasmic reticulum | 40.25 | 30.92 |
| TraesCS2B01G232500.1 | Wheat | plastid | 31.45 | 30.49 |
| Bra038577.1-P | Field mustard | mitochondrion | 30.19 | 30.38 |
| AT4G21510.1 | Thale cress | cytosol | 42.77 | 30.22 |
| CDY03828 | Canola | mitochondrion | 42.14 | 29.52 |
| CDY72037 | Canola | mitochondrion | 39.62 | 29.44 |
| KRH49741 | Soybean | mitochondrion | 29.56 | 29.01 |
| Zm00001d006591_P001 | Maize | plastid | 30.19 | 28.24 |
| CDY40953 | Canola | extracellular, golgi | 24.53 | 20.97 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400012930 | EnsemblPlantsGene:PGSC0003DMG400005038 | EntrezGene:102581703 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:F-box-like_dom_sf | PANTHER:PTHR34049 | PANTHER:PTHR34049:SF1 | PGSC:PGSC0003DMG400005038 | RefSeq:XP_006343266.1 | RefSeq:XP_015162416.1 |
| SUPFAM:SSF81383 | UniParc:UPI0002964D21 | UniProt:M1A214 | MapMan:35.1 | : | : |
Description
F-box family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400005038]
Coordinates
chr3:+:2193780..2195742
Molecular Weight (calculated)
17748.0 Da
IEP (calculated)
8.079
GRAVY (calculated)
-0.433
Length
159 amino acids
Sequence
(BLAST)
(BLAST)
001: MALGNDCDNL GLGIVRSTSF GRKRVTLSNT GDVNFVSTTP TKRICSQTSF STNDKSDLET LPKDLLIKIV CRADHDDLKS LFHVSRTLRE ASLIAKGWHF
101: DFSTPRKTLP FRDALDVEEL GDIDEEEKAP NAPMQSKIAR SRFNRKKLAD ISVALFTDS
101: DFSTPRKTLP FRDALDVEEL GDIDEEEKAP NAPMQSKIAR SRFNRKKLAD ISVALFTDS
001: MALGKKRIVT QKPNLRQRRD VDNGGLGLGL EFVQYKRGFG RKRILISSGD EMEDSIFTSP VGKKLCDDKT TSVAEGQSRE LEDLPLDILV RIICGVEHED
101: LKQLFHVSKT IREATMIAKQ SHFAYSTPRK TSVFHHGRFG WDKPFDVEDD DEEIEAPGAP LQKRYRLSRI NRNKDDSGVS VALFH
101: LKQLFHVSKT IREATMIAKQ SHFAYSTPRK TSVFHHGRFG WDKPFDVEDD DEEIEAPGAP LQKRYRLSRI NRNKDDSGVS VALFH
Arabidopsis Description
F-box protein At1g61340 [Source:UniProtKB/Swiss-Prot;Acc:Q8GX77]
SUBAcon: [mitochondrion,nucleus]
SUBAcon: [mitochondrion,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.