CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029548.1-P	Field mustard	nucleus	97.06	97.06
CDY16621	Canola	nucleus	97.06	97.06
AT4G05010.1	Thale cress	nucleus	64.12	66.46
CDX90883	Canola	nucleus	58.82	56.18
CDY21323	Canola	nucleus	57.65	55.06
CDY19351	Canola	cytosol, mitochondrion, nucleus	35.88	41.5
VIT_00s0181g00080.t01	Wine grape	nucleus	41.76	41.28
PGSC0003DMT400057575	Potato	mitochondrion	21.76	39.78
KRH49947	Soybean	mitochondrion, plastid	35.88	39.35
KRH41926	Soybean	plastid	35.88	39.35
CDX97944	Canola	mitochondrion	33.53	38.78
KRH10756	Soybean	cytosol	25.88	38.6
Solyc03g006640.2.1	Tomato	cytosol	35.29	37.74
KRH21571	Soybean	cytosol	32.94	36.84
PGSC0003DMT400012930	Potato	cytosol	33.53	35.85
Solyc02g079150.1.1	Tomato	mitochondrion	34.12	35.15
KRH21550	Soybean	cytosol	17.65	34.88
PGSC0003DMT400029256	Potato	plastid	34.71	33.33
Solyc10g005480.2.1	Tomato	cytosol, plastid	34.12	32.77
CDX79068	Canola	endoplasmic reticulum, extracellular	39.41	32.37
CDX82831	Canola	endoplasmic reticulum	39.41	32.37
CDY15010	Canola	mitochondrion, nucleus	34.12	32.04
CDY47573	Canola	cytosol, mitochondrion	33.53	31.67
GSMUA_Achr9P02840_001	Banana	cytosol	30.59	31.52
Zm00001d021779_P001	Maize	cytosol	19.41	30.0
GSMUA_Achr6P29300_001	Banana	cytosol	21.76	28.91
Os07t0561300-01	Rice	plastid	27.65	27.98
KRH49741	Soybean	mitochondrion	25.88	27.16
TraesCS2A01G205100.1	Wheat	plastid	25.88	26.83
TraesCS2B01G232500.1	Wheat	plastid	25.88	26.83
TraesCS2D01G211000.1	Wheat	plastid	25.88	26.83
HORVU2Hr1G040830.2	Barley	plastid	25.88	26.83
KXG36477	Sorghum	plastid	26.47	26.47
CDY72037	Canola	mitochondrion	32.94	26.17
CDY03828	Canola	mitochondrion	33.53	25.11
Zm00001d006591_P001	Maize	plastid	22.94	22.94
CDY40953	Canola	extracellular, golgi	24.71	22.58

Protein Annotations

EnsemblPlants:CDY44748	EnsemblPlantsGene:GSBRNA2T00080735001	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR34049	PANTHER:PTHR34049:SF1	PFAM:PF00646
PFscan:PS50181	ProteinID:CDY44748	ProteinID:CDY44748.1	SEG:seg	SUPFAM:SSF81383	UniParc:UPI0004EC1B4E
UniProt:A0A078I6J3	MapMan:35.1	:	:	:	:

Description

BnaC09g22320DBnaC09g22320D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I6J3]

Coordinates

chrLK032600:+:143190..144195

Molecular Weight (calculated)

19166.7 Da

IEP (calculated)

10.398

GRAVY (calculated)

-0.721

Length

170 amino acids

Sequence
(BLAST)

001: MAFANRGFSK FHGKEEALGL GFVRITRGLG RKRILISKSN QENVSNSDQN LLKRSKSETT ESNNSVLESL HQDILIRVLC HVDHDDLARL KRVSKTIRNA
101: VLEAKKSHFD YSTPKKALSF RDPLVTLNED SNSNSTSDQD DEIEPPNAPT RRKNVSRESG LSKISMVLFK

Best Arabidopsis Sequence Match ( AT4G05010.1 )
(BLAST)

001: MAYLSDGFEM KSTREYERLG LGFVRFTRGL GRKRILISKR APENDSPPVK RPSHETTESC RSLLETLHQD ILIRVLCHVD HEDLATLKRV SKTIRKAVIE
101: AKKSHFDYST PKKRLPFRDA ILILDSNSNS SSQDDEMEPP NAPIRRRFIN RESDLSKISM VLFK

Arabidopsis Description

F-box protein At4g05010 [Source:UniProtKB/Swiss-Prot;Acc:Q9S9T6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.