Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY16621 | Canola | nucleus | 67.68 | 65.29 |
| Bra029548.1-P | Field mustard | nucleus | 67.07 | 64.71 |
| CDY44748 | Canola | nucleus | 66.46 | 64.12 |
| CDX90883 | Canola | nucleus | 60.98 | 56.18 |
| Bra000811.1-P | Field mustard | nucleus | 59.76 | 55.06 |
| CDY21323 | Canola | nucleus | 59.76 | 55.06 |
| KRH10756 | Soybean | cytosol | 29.27 | 42.11 |
| Solyc03g006640.2.1 | Tomato | cytosol | 38.41 | 39.62 |
| KRH21571 | Soybean | cytosol | 36.59 | 39.47 |
| VIT_00s0181g00080.t01 | Wine grape | nucleus | 39.02 | 37.21 |
| PGSC0003DMT400012930 | Potato | cytosol | 35.98 | 37.11 |
| KRH49947 | Soybean | mitochondrion, plastid | 34.76 | 36.77 |
| AT1G61340.1 | Thale cress | mitochondrion, nucleus | 40.85 | 36.22 |
| KRH41926 | Soybean | plastid | 33.54 | 35.48 |
| PGSC0003DMT400057575 | Potato | mitochondrion | 20.12 | 35.48 |
| Solyc10g005480.2.1 | Tomato | cytosol, plastid | 36.59 | 33.9 |
| KRH21550 | Soybean | cytosol | 17.68 | 33.72 |
| AT4G21510.1 | Thale cress | cytosol | 45.73 | 33.33 |
| Solyc02g079150.1.1 | Tomato | mitochondrion | 32.93 | 32.73 |
| PGSC0003DMT400029256 | Potato | plastid | 34.76 | 32.2 |
| Zm00001d021779_P001 | Maize | cytosol | 20.73 | 30.91 |
| GSMUA_Achr9P02840_001 | Banana | cytosol | 31.1 | 30.91 |
| GSMUA_Achr6P29300_001 | Banana | cytosol | 22.56 | 28.91 |
| KRH49741 | Soybean | mitochondrion | 27.44 | 27.78 |
| KXG36477 | Sorghum | plastid | 28.66 | 27.65 |
| HORVU2Hr1G040830.2 | Barley | plastid | 27.44 | 27.44 |
| TraesCS2A01G205100.1 | Wheat | plastid | 27.44 | 27.44 |
| TraesCS2D01G211000.1 | Wheat | plastid | 27.44 | 27.44 |
| Os07t0561300-01 | Rice | plastid | 28.05 | 27.38 |
| TraesCS2B01G232500.1 | Wheat | plastid | 26.83 | 26.83 |
| Zm00001d006591_P001 | Maize | plastid | 25.61 | 24.71 |
Protein Annotations
| MapMan:35.1 | EntrezGene:825843 | ProteinID:AAD48976.1 | ProteinID:AEE82458.1 | ArrayExpress:AT4G05010 | EnsemblPlantsGene:AT4G05010 |
| RefSeq:AT4G05010 | TAIR:AT4G05010 | RefSeq:AT4G05010-TAIR-G | EnsemblPlants:AT4G05010.1 | TAIR:AT4G05010.1 | ProteinID:CAB81043.1 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0008150 |
| InterPro:IPR001810 | RefSeq:NP_567282.1 | PFAM:PF00646 | PO:PO:0000293 | PANTHER:PTHR34049 | PANTHER:PTHR34049:SF1 |
| UniProt:Q9S9T6 | SUPFAM:SSF81383 | UniParc:UPI00000A0577 | SEG:seg | : | : |
Description
F-box protein At4g05010 [Source:UniProtKB/Swiss-Prot;Acc:Q9S9T6]
Coordinates
chr4:+:2567183..2568437
Molecular Weight (calculated)
18970.9 Da
IEP (calculated)
10.297
GRAVY (calculated)
-0.638
Length
164 amino acids
Sequence
(BLAST)
(BLAST)
001: MAYLSDGFEM KSTREYERLG LGFVRFTRGL GRKRILISKR APENDSPPVK RPSHETTESC RSLLETLHQD ILIRVLCHVD HEDLATLKRV SKTIRKAVIE
101: AKKSHFDYST PKKRLPFRDA ILILDSNSNS SSQDDEMEPP NAPIRRRFIN RESDLSKISM VLFK
101: AKKSHFDYST PKKRLPFRDA ILILDSNSNS SSQDDEMEPP NAPIRRRFIN RESDLSKISM VLFK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.